cfda5d697701c33ce782310b6343ad3469791620
lrnassar
  Wed Jul 17 17:08:36 2024 -0700
Doing some refSeq surgery to fix mm9 issue on #34008. Essentially it was OK to have human include at that level - which allowed for an override at the species level. The reason for these overrides is Terrence asked us to make ncbiRefSeq (refseq all) the default on all organisms other than human and mouse. Having the addition at the hg38/hg19 level would mean duplicating the entire trackDb stanza in ncbiRefseqComposite.ra. For mouse, however, mm9 was having a conflict with the addition at the mouse level. So I moved mm10 and mm39 to have a new file at the mouse level and removed the mouse include. Refs #34008

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 2f57788..b992e3d 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -4864,30 +4864,32 @@
         parent doseSensitivity
         shortLabel Triplo Sensitivity
         longLabel ClinGen Triplo Sensitivity
         visibility dense
         priority 2
         type bigBed 9 +
         bigDataUrl /gbdb/$D/doseSensitivity/clinGenTriploSensitivity.bb
         mouseOverField mouseOver
         subGroups view=dose class=path level=cur
 
 include phastBias.ra
 
 include omim.ra beta,public
 include omim.alpha.ra alpha
 
+include ../refSeqComposite.ra
+
 searchName decipherId
 searchTable decipher
 termRegex [0-9]+
 searchType bed
 searchPriority 50
 release public
 
 searchName decipherSnvsId
 searchTable decipherSnvs
 termRegex [0-9]+
 searchType bed
 searchPriority 50
 
 searchTable ensGene
 searchType genePred