3820fe7ad2022db9e9783e53004212c867f0fff3
lrnassar
  Wed Jul 24 13:02:20 2024 -0700
Archiving/restructuring rarely used tracks into superTracks. This commit covers a few different tickets, all related to refs #32813.

diff --git src/hg/makeDb/trackDb/human/covidHgiGwas.ra src/hg/makeDb/trackDb/human/covidHgiGwas.ra
index 24a7329..eda386d 100644
--- src/hg/makeDb/trackDb/human/covidHgiGwas.ra
+++ src/hg/makeDb/trackDb/human/covidHgiGwas.ra
@@ -1,21 +1,20 @@
 track covidHgiGwasR4Pval
 shortLabel COVID GWAS v4
 longLabel COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020)
 compositeTrack on
-group varRep
-visibility hide
+superTrack covid pack
 autoScale on
 maxHeightPixels 48:75:128
 type bigLolly 9 +
 lollyField 13
 mouseOver $name $ref/$alt effect $effectSize pVal $pValue studies $sourceCount
 maxItems 500000
 viewLimits 0:10
 filter.sourceCount 1
 filterLabel.sourceCount Minimum number of studies
 filter.pValueLog 3
 filter.effectSize -1.6:2.2
 filterLimits.effectSize -1.6:2.2
 filterLabel.effectSize Effect size range
 filterByRange.effectSize on
 filter._effectSizeAbs 0
@@ -45,32 +44,31 @@
     longLabel Tested COVID risk variants from the COVID-19 HGI GWAS Analyis C1 (11085 cases, 20 studies, Rel 4: Oct 2020)
     bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4.C1.$D.bb
     priority 3
 
     track covidHgiGwasR4PvalC2
     parent covidHgiGwasR4Pval on
     shortLabel All COVID vars
     longLabel COVID risk variants from the COVID-19 HGI GWAS Analysis C2 (17965 cases, 33 studies, Rel 4: Oct 2020)
     bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4.C2.$D.bb
     priority 4
 
 track covidHgiGwas
 shortLabel COVID GWAS v3
 longLabel GWAS meta-analyses from the COVID-19 Host Genetics Initiative
 compositeTrack on
-group varRep
-visibility hide
+superTrack covid hide
 autoScale on
 maxHeightPixels 48:75:128
 type bigLolly 9 +
 lollyField 21
 mouseOver $name $ref/$alt effect $effectSize pval $pValue studies $sourceCount
 maxItems 500000
 filter.sourceCount 1
 filterLabel.sourceCount Minimum number of studies
 filter.pValueLog 3
 viewLimits -13:21
 filter.effectSize -13:21
 filterLimits.effectSize -13:21
 filterLabel.effectSize Effect size range
 filterByRange.effectSize on
 filter._effectSizeAbs 0