Commits for jcasper

v470_preview2 to v470_base (2024-08-19 to 2024-08-26) v470

675b8fd206cf04c156f750afd6312511585e5af0 Tue Aug 20 16:56:43 2024 -0700

• Resolving namespace collision with libcurl, refs #34329
  • src/hg/inc/fakeCurl.h - lines changed 19, context: html, text, full: html, text

7bbd36dc6799e276b86cf9ed8abae3d714840ffb Thu Aug 22 16:28:34 2024 -0700

• V47 knownGene trackDb, refs #34219
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.nmd_deco.ra - lines changed 50, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGeneV47.html - lines changed 168, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 4, context: html, text, full: html, text

59e29ecdf6202d659db238f69903cb27c5e8f69c Fri Aug 23 10:49:52 2024 -0700

• A few code changes and docs in support of knownGene V47, refs #34219
  • src/hg/makeDb/doc/ucscGenes/hg38.gencodeV47.sh - lines changed 38, context: html, text, full: html, text
  • src/hg/makeDb/makeGencodeKnownGene/makeGencodeKnownGene.c - lines changed 18, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/buildCore.sh - lines changed 2, context: html, text, full: html, text

d54c1fc1096eae923756e64f0e4ea43108da8e50 Fri Aug 23 14:08:24 2024 -0700

• V47lift37 knownGene trackDb, refs #34226
  • src/hg/makeDb/trackDb/human/hg19/knownGene.alpha.ra - lines changed 43, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/knownGeneArchive.ra - lines changed 26, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/knownGeneV47lift37.html - lines changed 167, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text

bfb6267a05fde313f64ae853a48b8d07f5d48316 Fri Aug 23 17:16:14 2024 -0700

• Makedoc for knownGeneV47lift37, refs #34226
  • src/hg/makeDb/doc/ucscGenes/hg19.gencodeV47lift37.sh - lines changed 27, context: html, text, full: html, text

14c65fe9e5906c471a4a7282734ef8076f998ebc Sun Aug 25 01:11:20 2024 -0700

• Installing updated hg.conf files from UCSC servers
  • confs/asia.hg.conf - lines changed 3, context: html, text, full: html, text
  • confs/euro.hg.conf - lines changed 3, context: html, text, full: html, text
  • confs/hgwbeta.hg.conf - lines changed 1, context: html, text, full: html, text
  • confs/hgwdev.hg.conf - lines changed 2, context: html, text, full: html, text
  • confs/rr.hg.conf - lines changed 3, context: html, text, full: html, text

aee632d3aca162060d3477bf44703cbc974bfd7a Mon Aug 26 11:10:02 2024 -0700

• v470 final build, refs #34278
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text

a04d3c0e3c4d4ef6fcbe5298eef425c6cc9aab60 Mon Aug 26 11:11:06 2024 -0700

• New version number v470
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text
  • src/inc/srcVersion.h - lines changed 1, context: html, text, full: html, text