8796500caefe26d7872e2d6a8ffbed913d70a8f0 hiram Wed Aug 7 11:30:21 2024 -0700 an update for VGP to add 67 assemblies refs #29545 diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index e60ffad..6053cdb 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -121,30 +121,31 @@ GCA_004365145.1_OryAfe_v1_BIUU mammals GCA_004365275.1_TupTan_v1_BIUU mammals GCA_006229205.1_meerkat_22Aug2017_6uvM2_HiC mammals GCA_007210705.1_Tcal_SD_v2.1 invertebrate GCA_007364275.2_fArcCen1 fish GCA_009663435.1_Callithrix_jacchus_cj1700_1.0 primates GCA_009762305.1_mZalCal1.pri mammals GCA_009762595.1_rDerCor1.alt vertebrate GCA_009764475.1_sPriPec2.pri vertebrate GCA_009764565.1_rDerCor1.pri vertebrate GCA_009769485.1_bCygOlo1.alt birds GCA_009769545.1_fCycLum1.pri fish GCA_009769625.1_bCygOlo1.pri birds GCA_009806435.2_UM_NZW_1.0 mammals GCA_009819505.1_bCatUst1.alt birds +GCA_009819655.1_bSylAtr1.pri birds GCA_009819705.1_fHipHip1.pri fish GCA_009829125.1_fPerMag1.pri fish GCA_009873245.2_mBalMus1.v2 mammals GCA_009914755.4_T2T-CHM13v2.0 primates GCA_010909765.1_sAmbRad1.pri vertebrate GCA_011004845.1_fEsoLuc1.pri fish GCA_011064685.1_ZJU_Sfru_1.0 invertebrate GCA_011100535.1_mCalJac1.pat primates GCA_011100555.2_mCalJa1.2.pat.X primates GCA_011100635.1_mTriVul1.pri mammals GCA_011762505.1_mArvNil1.pat.X mammals GCA_011762595.1_mTurTru1.mat.Y mammals GCA_012275295.1_bMelUnd1.mat.Z birds GCA_013347855.1_fAngAng1.pri vertebrate GCA_014108255.1_mRhiFer1.p mammals @@ -187,41 +188,48 @@ GCA_027477595.1_bHaeMex1.pri birds GCA_027579445.1_bAmmNel1.pri birds GCA_027579695.1_fNeoGra1.pri fish GCA_027579735.1_aBomBom1.pri vertebrate GCA_027887145.1_bAmmCau1.pri birds GCA_027887155.1_rMalTer1.hap1 vertebrate GCA_027887165.1_mMonDom1.pri mammals GCA_028018385.1_mNeoNeb1.pri mammals GCA_028018845.1_bMelGeo1.pri birds GCA_028023285.1_mBalRic1.hap2 mammals GCA_028389875.1_bPtePen1.pri birds GCA_028390025.1_aPseCor3.hap2 vertebrate GCA_028500815.1_bRisTri1.patW.cur.20221130 birds GCA_028564815.1_mEubGla1.hap2 mammals GCA_028858705.1_bGruAme1.mat birds +GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri primates GCA_028858805.1_NHGRI_mPanTro3-v1.1-hic.freeze_alt primates GCA_028885525.1_NHGRI_mPonPyg2-v1.1-hic.freeze_alt primates +GCA_029207755.1_bChaFas1.0.hap1 birds GCA_029499605.1_aHylSar1.hap1 vertebrate +GCA_029633855.1_fHopMal1.hap1 fish GCA_029633865.1_fLamInc1.hap2 fish GCA_030028045.1_mHipAmp2.hap2 mammals GCA_030144855.1_sHypSab1.hap1 vertebrate GCA_030435805.1_mMusLut2.pri mammals GCA_030684315.1_sSteTig4.hap1 vertebrate GCA_030867065.1_rAllMis1 vertebrate GCA_030867095.1_rAllMis1 vertebrate GCA_030936135.1_bGavSte3.hap2 birds +GCA_035083965.1_klBraLanc5.hap2 invertebrate +GCA_036850765.1_mSacBil1_pri_phased_curated mammals +GCA_036850995.1_mSacLep1_pri_phased_curated mammals +GCA_038363095.1_mArtLit.hap1 mammals GCA_900006655.3_Susie3 primates GCA_900094665.2_CAROLI_EIJ_v1.1 mammals GCA_900324465.2_fAnaTes1.2 fish GCA_900634415.1_fCotGob3.1 fish GCA_900634775.1_fGouWil2.1 fish GCA_901343595.1_MONAX5 mammals GCA_901699155.1_bStrTur1.1 birds GCA_901699165.1_bStrTur1.1_alternate_haplotype birds GCA_901709675.1_fSynAcu1.1 fish GCA_902153765.1_bAquChr1.2_alternate_haplotype birds GCA_902459505.1_aGeoSer1.1 vertebrate GCA_902500255.1_fThaAma1.1 fish GCA_902686455.1_mSciVul1.1 mammals GCA_902713425.2_fAciRut3.2_maternal_haplotype fish GCA_904849725.1_MorexV3_pseudomolecules_assembly plants @@ -404,30 +412,31 @@ GCF_016086655.2_UVic_Lsal_1.1 invertebrate GCF_016699345.1_BCM_Sbol_2.0 primates GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w birds GCF_016746245.1_Prin_Dsan_1.0 invertebrate GCF_016746365.1_Prin_Dyak_Tai18E2_2.0 invertebrate GCF_016746395.1_Prin_Dsim_3.0 invertebrate GCF_016801865.1_TS_Cpip_V1 invertebrate GCF_016920785.1_Ixodes_scapularus_ComboLowHiFi invertebrate GCF_017639655.1_bFalNau1.pat birds GCF_021218885.1_Marmota_monax_Labrador192_V1.0 mammals GCF_021288785.1_ASM2128878v2 mammals GCF_022539665.1_CSIRO_AGI_Dcar_v0.2 invertebrate GCF_023065955.1_UrsArc1.0 mammals GCF_028858775.1_NHGRI_mPanTro3-v1.1-hic.freeze_pri primates GCF_028878055.1_NHGRI_mSymSyn1-v1.1-hic.freeze_pri primates +GCF_028878055.2_NHGRI_mSymSyn1-v2.0_pri primates GCF_028885625.1_NHGRI_mPonPyg2-v1.1-hic.freeze_pri primates GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri primates GCF_029281585.1_NHGRI_mGorGor1-v1.1-0.2.freeze_pri primates GCF_029289425.1_NHGRI_mPanPan1-v1.1-0.1.freeze_pri primates GCF_900094665.1_CAROLI_EIJ_v1.1 mammals GCF_900246225.1_fAstCal1.2 fish GCF_900324465.1_fAnaTes1.1 fish GCF_900324465.2_fAnaTes1.2 fish GCF_900324485.1_fMasArm1.1 fish GCF_900496995.1_bAquChr1.2 birds GCF_900634625.1_fParRan2.1 fish GCF_900634775.1_fGouWil2.1 fish GCF_900634795.2_fBetSpl5.2 fish GCF_900634795.3_fBetSpl5.3 fish GCF_900700375.1_fDenClu1.1 fish