55d9748b1ae610c7a16d106ca2bbf7485429ed0e max Tue Jul 23 16:49:31 2024 -0700 adding URL to command line tool doc, no redmine diff --git src/hg/utils/pslToBigPsl/pslToBigPsl.c src/hg/utils/pslToBigPsl/pslToBigPsl.c index 4221246..e1d2b60 100644 --- src/hg/utils/pslToBigPsl/pslToBigPsl.c +++ src/hg/utils/pslToBigPsl/pslToBigPsl.c @@ -9,30 +9,31 @@ #include "fa.h" #include "genbank.h" #include "net.h" void usage() /* Explain usage and exit. */ { errAbort( "pslToBigPsl - converts psl to bigPsl input (bed format with extra fields)\n" "usage:\n" " pslToBigPsl file.psl stdout | sort -k1,1 -k2,2n > file.bigPslInput\n" "options:\n" " -cds=file.cds - tab-separated columns with the qName and a GenBank style one-based CDS (e.g. 475..1731, <1..354)\n" " -fa=file.fasta\n" "NOTE: to build bigBed:\n" + " wget https://genome.ucsc.edu/goldenPath/help/examples/bigPsl.as\n" " bedToBigBed -type=bed12+13 -tab -as=bigPsl.as file.bigPslInput chrom.sizes output.bb\n" ); } boolean snakeMode = FALSE; /* Command line validation table. */ static struct optionSpec options[] = { {"cds", OPTION_STRING}, {"fa", OPTION_STRING}, {NULL, 0}, }; static unsigned initNumBlocks = 1000; static unsigned currentNumBlocks = 0;