src/hg/htdocs/assemblySearch.html 0956e5536532f162f20c601bc3cfbf65705ef85e

0956e5536532f162f20c601bc3cfbf65705ef85e
hiram
  Sat Aug 17 08:15:54 2024 -0700
fixup to work in this new location refs #32596

diff --git src/hg/htdocs/assemblySearch.html src/hg/htdocs/assemblySearch.html
index fba6dc0..367e529 100755
--- src/hg/htdocs/assemblySearch.html
+++ src/hg/htdocs/assemblySearch.html
@@ -1,109 +1,108 @@
 <!DOCTYPE HTML>
-<!--#set var="TITLE" value="prototype assembly search page" -->
-<!--#set var="ROOT" value="../.." -->
+<!--#set var="TITLE" value="Genome Assembly Search" -->
+<!--#set var="ROOT" value="" -->
 
 <!--#include virtual='$ROOT/inc/gbPageStartHardcoded.html' -->
 
-<link rel="stylesheet" type="text/css" href="search.css">
+<link rel="stylesheet" type="text/css" href="<!--#echo var='ROOT' -->/style/assemblySearch.css">
 
     <h1>Assembly search page</h1>
 <hr>
     <p>When a browser exists, the <b>name</b> column will be a link to
        that browser.<br>
        TO BE DONE: when browser doesn't exist: pop-up request form
     </p>
     <form id="searchForm">
         <div class="formDiv">
         <div>
         <label for="searchBox">Enter search term(s) to find assembly:</label>
         <input type="text" id="searchBox" name="searchBox" required>
         <div class="submitContainer">
            <button id="submitButton" type="submit">Search</button>
            <div id="loadingSpinner" class="spinner"></div>
         </div>
         <button type="button" id="clearSearch">Clear</button>
         <label for="limitResultCount">limit results to:
         <select id="limitResultCount" name="limitResultCount">
            <option value="10">10</option>
            <option value="20">20</option>
            <option value="50">50</option>
            <option value="100">100</option>
            <option value="200">200</option>
            <option value="500">500</option>
         </select>
         count</label>
         </div>
         <div class="radioGroupContainer">
            <div class="radioGroup">
            <label><input type="radio" name="browserExist" value="mustExist" checked>
               show results only when browser is available
            </label><br>
            <label><input type="radio" name="browserExist" value="mayExist">
               show results when browser is available or assembly can be requested
            </label><br>
            <label><input type="radio" name="browserExist" value="notExist">
               show results only for assemblies that can be requested
            </label>
            </div>
            <div class="radioGroup">
               <label>may match any word <input type="radio" name="wordMatch" value="anyWord" checked></label>
               <label>must match all words <input type="radio" name="wordMatch" value="allWords"></label>
                <span class="searchtip">advanced search tips
       <span class="searchtiptext">
 <ol class="noBullets">
 <li> + (plus) sign before <b>+word</b> to force included in result</li>
 <li> - (minus) sign before <b>-word</b> to exclude word from result</li>
 <li> * (asterisk) character at end of <b>word*</b> to make the word be a prefix search</li>
 <li> enclose "words in quotes" to form a phrase for the search</li>
 <li> all searches are case insensitive</li>
 <li> single word searches become prefix searches if the word does not match by itself </li>
 </ol>
 </span>
                </span>
            </div>
         </div>
         </div>
     </form>
     <div>
     <p><b>results for search string: '</b><span id="searchString">&nbsp;</span>',
     <b>total matching: </b><span id="matchCounts">0</span>,
     <b>from total number of assemblies: </b><span id="availableAssemblies">0</span>,
     <b>search time: </b><span id="elapsedTime">0 milliseconds</span>.
     </p>
     </div>
     <hr>
     <table id="dataTable" class="sorttable fifthRowHighlight" style="border: 1px solid black; display:block; max-height: 800px; max-width:1300px; overflow:auto; position:sticky; top:0;">
         <colgroup>
           <col style="width: 5%">
           <col style="width: 10%">
           <col style="width: 10%">
           <col style="width: 20%">
           <col style="width: 8%">
           <col style="width: 47%">
         </colgroup>
         <thead style="position:sticky; top:0; border:1px solid #ddd; width:100%" id="tableHeader">
          <tr><th>count</th>
          <th>name</th>
          <th>scientificName</th>
          <th>commonName</th>
          <th>clade</th>
          <th>description</th>
          </tr>
         </thead>
         <tbody id="tableBody"></tbody>
     </table>
     </hr>
     <div id="metaData">
     </div>
     </hr>
 
-    <!-- Include external JavaScript file -->
-    <script src="/~hiram/genomeSearch/scripts.js"></script>
 
 <hr />
 <!--#include virtual='$ROOT/inc/garModal.html' -->
 </div><!-- closing gbsPage from gbPageStartHardcoded.html -->
 </div><!-- closing container-fluid from gbPageStartHardcoded.html -->
 <!--#include virtual="$ROOT/inc/gbFooterHardcoded.html"-->
-<script src="sorttable.js"></script>
+<script src="<!--#echo var='ROOT' -->/js/assemblySearch.js"></script>
+<script src="<!--#echo var='ROOT' -->/js/sorttable.js"></script>
 </body></html>