d46d9e2daef609ed67e3b5c4a1d8ceddc70450c1
lrnassar
  Wed Aug 14 15:54:35 2024 -0700
Restructuring OMIM to be in a superTrack, refs #25682

diff --git src/hg/makeDb/trackDb/human/omim.ra src/hg/makeDb/trackDb/human/omim.ra
index 2f53212..264fc41 100644
--- src/hg/makeDb/trackDb/human/omim.ra
+++ src/hg/makeDb/trackDb/human/omim.ra
@@ -1,73 +1,84 @@
+track omimContainer
+superTrack on show
+shortLabel OMIM
+longLabel Online Mendelian Inheritance in Man
+group phenDis
+priority 1
+cartVersion 5
+
     track omimLocation
+    priority 3
     shortLabel OMIM Cyto Loci
     longLabel OMIM Cytogenetic Loci Phenotypes - Gene Unknown
-group phenDis
     visibility hide
     color 0, 80, 0
     type bed 4
     hgsid on
     url http://www.omim.org/entry/
     tableBrowser noGenome
     noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org
+    parent omimContainer
 
     track omimGene2
+    priority 2
     shortLabel OMIM Genes
     longLabel OMIM Gene Phenotypes - Dark Green Can Be Disease-causing
-group phenDis
     visibility dense
     color 0, 80, 0
     type bed 4
     hgsid on
     url http://www.omim.org/entry/
     tableBrowser noGenome omimGeneMap omimGeneMap2 omimPhenotype omimGeneSymbol omim2gene
     noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org
+    parent omimContainer
 
     track omimAvSnp
+    priority 1
     shortLabel OMIM Alleles
     longLabel OMIM Allelic Variant Phenotypes
-group phenDis
     visibility hide
     color 0, 80, 0
     type bed 4
     hgsid on
     url http://www.omim.org/entry/
     tableBrowser noGenome omimAv omimAvRepl
     noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org
+    parent omimContainer
 
 searchName omimAvSnpAcc
 searchTable omimAvSnp
 searchMethod exact
 searchType bed
 shortCircuit 1
 semiShortCircuit 1
 termRegex ([0-9]{6})\.([0-9]{4})
 searchPriority 10
 padding 50
 
 searchName omimGene2Acc
 searchTable omimGene2
 searchMethod exact
 searchType bed
 shortCircuit 1
 semiShortCircuit 1
 termRegex ([0-9]{6})
 searchPriority 10
 #release beta,public
 
 #searchName omimGene2AccBb
 #searchTable omimGene2bb
 #searchMethod exact
 #searchType bigBed
 #shortCircuit 1
 #semiShortCircuit 1
 #termRegex ([0-9]{6})
 #searchPriority 10
 #release alpha
 
 searchName omimGeneLocAcc
 searchTable omimLocation
 searchMethod exact
 searchType bed
 semiShortCircuit 1
 termRegex ([0-9]{6})
 searchPriority 10