aab2968b33510e69f67d493f0dab4f956bc8931e
mspeir
  Tue Aug 13 13:46:17 2024 -0700
Fixing Coordinate Counting link, refs #34288

diff --git src/hg/htdocs/goldenPath/help/hgTracksHelp.html src/hg/htdocs/goldenPath/help/hgTracksHelp.html
index 86d56db..cba44ce 100755
--- src/hg/htdocs/goldenPath/help/hgTracksHelp.html
+++ src/hg/htdocs/goldenPath/help/hgTracksHelp.html
@@ -1242,31 +1242,33 @@
 available for the current assembly. Select the genome and assembly to which you'd like to convert
 the coordinates, then click the <button>Submit</button> button. If the conversion is successful,
  the browser will
 return a list of regions in the new assembly, along with the percent of bases and span covered by
 that region. Click on a region to display it in the browser. If the conversion is unsuccessful, the
 utility returns a failure message.</p>
 
 <a name="Liftover"></a>
 <h3>Lifting coordinates</h3>
 <p>
 The liftOver tool is useful if you wish to convert a large number of coordinate ranges between
 assemblies. This tool is available in both web-based and command line forms, and supports
 forward/reverse conversions as well as conversions between species. You can use the
 <a href="../../FAQ/FAQformat.html#format1">BED format</a> (e.g. &quot;chr4 100000 100001&quot;,
 0-based) or directly paste text from the position box (&quot;chr4:100,001-100,001&quot;, 1-based).
-See our <a href="https://genome-blog.gi.ucsc.edu/blog/patches/">Coordinate Counting</a> blog post
+See our
+<a href="https://genome-blog.gi.ucsc.edu/blog/2016/12/12/the-ucsc-genome-browser-coordinate-counting-systems/"
+>Coordinate Counting</a> blog post
 for a discussion of the difference. If the coordinates do not cover a single base pair e.g.
 &quot;chr4 100000 100000&quot; (BED) or &quot;chr4:100,001-100,000&quot; (text), this tool
 automatically extends them to at least one base pair.</p>
 <p>
 <b>Note:</b> It is not recommeneded to use LiftOver to convert SNPs between assemblies,
 and more information about how to convert SNPs between assemblies can be found on the following
 <a href="/FAQ/FAQreleases.html#snpConversion">FAQ entry</a>.</p>
 
 <h3>Web-based coordinate lifting</h3>
 <p>
 To access the graphical version of the liftOver tool, click on &quot;Tools&quot; pulldown in the
 top blue menu bar of the Genome Browser, then select
 <a href="http://genome.ucsc.edu/cgi-bin/hgLiftOver">LiftOver</a> from the menu.
 Note that the web tool has an input file size limit of 500Mb, larger files will require
 using the command-line version.</p>