Commits for hiram

v471_preview2 to v471_base (2024-09-09 to 2024-09-16) v471

7147d370964619773bfd7a7761281240262aebe4 Tue Sep 10 15:05:22 2024 -0700

• adding pop up help text refs #32596
  • src/hg/htdocs/assemblySearch.html - lines changed 27, context: html, text, full: html, text
  • src/hg/htdocs/style/assemblySearch.css - lines changed 7, context: html, text, full: html, text
  • src/hg/js/assemblySearch.js - lines changed 9, context: html, text, full: html, text

ee44defec68c55c48cf35268d29bdd9392923542 Wed Sep 11 13:30:48 2024 -0700

• js/assemblySearch.js
  • src/hg/htdocs/assemblySearch.html - lines changed 8, context: html, text, full: html, text
  • src/hg/htdocs/style/assemblySearch.css - lines changed 4, context: html, text, full: html, text

54ea59ee208f0e498cfeb3d6ca7f1478fca8d5a4 Wed Sep 11 13:31:29 2024 -0700

• adding documention for all pop up informations boxes refs #32596
  • src/hg/js/assemblySearch.js - lines changed 13, context: html, text, full: html, text

3ef9201cf5cc70993b1e35a6b3aa4d9d85b470d7 Wed Sep 11 14:14:36 2024 -0700

• adding six more to help catch up refs #34337
  • src/hg/makeDb/doc/brcAsmHub/brc.orderList.tsv - lines changed 6, context: html, text, full: html, text

67ad3f3b39146140aef1db15ea45c7c45200fec0 Wed Sep 11 14:40:33 2024 -0700

• adding one per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 2, context: html, text, full: html, text

ccb13e0ba375da8b3ce296ec2813b1ff519bd88e Wed Sep 11 15:30:51 2024 -0700

• adjustments per feedback refs #32596
  • src/hg/htdocs/assemblySearch.html - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/style/assemblySearch.css - lines changed 28, context: html, text, full: html, text

d86274d116c9a29ddcf66f594c57bab80fb5a93c Wed Sep 11 15:31:27 2024 -0700

• adjustments per feedback refs #32596
  • src/hg/js/assemblySearch.js - lines changed 2, context: html, text, full: html, text

82be17cac081d3c6b3cc13407b570ad265fa6ad6 Thu Sep 12 11:38:02 2024 -0700

• proper delay on the pop ups and margins around elements remove the priority in the status column refs #32596
  • src/hg/htdocs/assemblySearch.html - lines changed 7, context: html, text, full: html, text
  • src/hg/htdocs/style/assemblySearch.css - lines changed 8, context: html, text, full: html, text
  • src/hg/js/assemblySearch.js - lines changed 1, context: html, text, full: html, text

6bd1b2f193f4cc37ac89a76582cb432e40988574 Thu Sep 12 15:42:26 2024 -0700

• better management of the addition of the compound words refs #32596
  • src/hg/hubApi/findGenome.c - lines changed 23, context: html, text, full: html, text

c0d655e157b7e29f988e6bb9416578d6ac08f40f Thu Sep 12 19:15:10 2024 -0700

• open the tsv file as latin-1 encoding to handle extended characters refs #34337
  • src/hg/makeDb/doc/asmHubs/tsvToJson.py - lines changed 1, context: html, text, full: html, text

a1387634d24e7ba1195bc31ba3339d1c98be018b Thu Sep 12 19:27:10 2024 -0700

• correcting some versions refs #29545
  • src/hg/makeDb/doc/brcAsmHub/brc.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 1, context: html, text, full: html, text

ff0ea8e2f1223e74bcb82b2426e6976bca6473b7 Thu Sep 12 20:50:47 2024 -0700

• get the year in the description if it is not in other fields and correctly lowerCase the category,status and level words refs #33720
  • src/hg/hubApi/assemblyList.py - lines changed 37, context: html, text, full: html, text

456f4a30692d5db99a4b90e76b2f7a4f06bae0e1 Fri Sep 13 10:53:13 2024 -0700

• simple year match is good enough refs #33720
  • src/hg/hubApi/assemblyList.py - lines changed 6, context: html, text, full: html, text

bd79f475d7a5bc2a54f40eed4c16db77dd28f14a Fri Sep 13 14:45:12 2024 -0700

• one word with wildcard* leave it as-is refs #32596
  • src/hg/hubApi/findGenome.c - lines changed 3, context: html, text, full: html, text

215ac86539ac6a12e2db96c777a7a1568817318a Fri Sep 13 16:07:46 2024 -0700

• getting the GC accessions into dbDb descriptions when possible refs #33720
  • src/hg/hubApi/assemblyList.py - lines changed 5, context: html, text, full: html, text

2136bd857c7f0ce869fce9d10f6f412bc7eb1100 Fri Sep 13 16:09:16 2024 -0700

• adding 89 for the BRC project new type of invertebrate refs #34337
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 90, context: html, text, full: html, text