8fd8e815893d5f97f33b065862e727273f13a7b6
angie
  Wed Aug 28 18:29:54 2024 -0700
Add ncbiRefSeqLink.omimId to omimId rule.  refs #34013

diff --git src/hg/makeDb/schema/all.joiner src/hg/makeDb/schema/all.joiner
index 385ec3c..1384f0a 100644
--- src/hg/makeDb/schema/all.joiner
+++ src/hg/makeDb/schema/all.joiner
@@ -10826,36 +10826,37 @@
     $hg.omim2gene.geneId minCheck=0.60
     $rn.rgdGene2ToLocusLink.value minCheck=0.70
 
 identifier omimLocationId external=OMIM
 "Online Mendelian Inheritance in Man (OMIM) Location ID"
     $hg.omimLocation.name dupeOk exclude=0
     $hg.omimGeneMap.omimId full minCheck=0.07
     $hg.omimGeneMap2.omimId full minCheck=0.07
 
 identifier omimAvSnpId external=OMIM
 "Online Mendelian Inheritance in Man (OMIM) AV SNP ID"
     $hg.omimAvSnp.name dupeOk exclude=0
 
 identifier omimId external=OMIM
 "Online Mendelian Inheritance in Man (OMIM) ID"
-    hgFixed.refLink.omimId dupeOk exclude=0
-    $hg.omimGene2.name minCheck=0.90
+    $hg.omimGene2.name dupeOk
+    $hg.ncbiRefSeqLink.omimId minCheck=0.60
+    hgFixed.refLink.omimId exclude=0
     $hg.omimPhenotype.omimId minCheck=0.75
     $hg.omimGeneMap.omimId minCheck=0.85
     $hg.omimGeneMap2.omimId minCheck=0.85
-    $hg.omim2gene.omimId minCheck=0.60
+    $hg.omim2gene.omimId minCheck=0.50
 
 identifier omimAvId external=OMIM
 "Online Mendelian Inheritance in Man (OMIM) AV ID"
     $hg.omimAv.avId dupeOk exclude=0
     $hg.omimAvRepl.avId minCheck=0.90
     $hg.omimAvSnp.name minCheck=0.90
 
 identifier omimGene2Id
 "omimGene2 ID"
     $hg.omimGene2.name dupeOk
     $hg.omimGeneSymbol.omimId minCheck=0.90
     $hg.omimAv.omimId minCheck=0.90
     $hg.omimAvRepl.omimId minCheck=0.90
     $hg.omimPhenotype.omimId minCheck=0.75
     hgFixed.refLink.omimId exclude=0 minCheck=0.98