8e712a67beb687070337c4739f6a3664c5cc8225
angie
  Wed Aug 14 13:10:23 2024 -0700
Fix lineage check to compare vs. lineages actually annotated on the tree, not just lineages present in pango.clade-mutations.tsv.

diff --git src/hg/utils/otto/sarscov2phylo/designatedNotAnnotated src/hg/utils/otto/sarscov2phylo/designatedNotAnnotated
new file mode 100644
index 0000000..5091980
--- /dev/null
+++ src/hg/utils/otto/sarscov2phylo/designatedNotAnnotated
@@ -0,0 +1,32 @@
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