8ecd4ec7a45dc9f84f487d829b648f69c05fa862 hiram Wed Aug 28 15:11:22 2024 -0700 adding four columns to the database table for more accurate search refs #32596 diff --git src/hg/lib/assemblyList.as src/hg/lib/assemblyList.as index f51dd58..f3d42ff 100644 --- src/hg/lib/assemblyList.as +++ src/hg/lib/assemblyList.as @@ -1,13 +1,17 @@ table assemblyList "listing all UCSC genomes, and all NCBI assemblies, with search priority, and status if browser available or can be requested ( string name; "UCSC genome: dbDb name or GenArk/NCBI accession" uint priority; "assigned search priority" string commonName; "a common name" string scientificName; "binomial scientific name" uint taxId; "Entrez taxon ID: www.ncbi.nlm.nih.gov/taxonomy/?term=xxx" string clade; "approximate clade: primates mammals birds fish ... etc ..." string description; "other description text" ubyte browserExists; "1 == this assembly is available at UCSC, 0 == can be requested" string hubUrl; "path name to hub.txt: GCF/000/001/405/GCF_000001405.39/hub.txt" + uint year; "year of assembly construction" + string refSeqCategory; "one of: reference, representative or na" + string versionStatus; "one of: latest, replaced or suppressed" + string assemblyLevel; "one of: complete, chromosome, scaffold or contig" )