45337f0f68ec7ec4e44183884dde67e81163ec67
jcasper
  Mon Aug 26 16:07:20 2024 -0700
More updates for soe hostname deprecation, no ticket

diff --git src/hg/makeDb/hgLoadWiggle/chkWiggleTable.sh src/hg/makeDb/hgLoadWiggle/chkWiggleTable.sh
index dd5a432..8972c94 100755
--- src/hg/makeDb/hgLoadWiggle/chkWiggleTable.sh
+++ src/hg/makeDb/hgLoadWiggle/chkWiggleTable.sh
@@ -20,75 +20,75 @@
 fi
 
 UNAME=`uname -n`
 
 if [ "${UNAME}" != "kolossus" ]; then
     echo "ERROR: must be run on kolossus to handle the largest chromosomes"
     usage
     exit 255
 fi
 
 DB=$1
 TABLE=$2
 
 echo "Checking Table: ${DB}.${TABLE}"
 
-C=`hgsql -N --host=hgwdev.soe.ucsc.edu --user=hguser --password=hguserstuff \
+C=`hgsql -N --host=hgwdev.gi.ucsc.edu --user=hguser --password=hguserstuff \
 	-e "describe ${TABLE};" ${DB} | \
 	egrep "chromStart|span|dataRange|sumSquares" | wc -l`
 
 if [ "${C}" -ne 4 ]; then
     echo "ERROR: table ${DB}.${TABLE} does not appear to be a wiggle table ?"
-    hgsql --host=hgwdev.soe.ucsc.edu --user=hguser --password=hguserstuff \
+    hgsql --host=hgwdev.gi.ucsc.edu --user=hguser --password=hguserstuff \
 	-e "describe ${TABLE};" ${DB}
     usage
     exit 255
 fi
 
 #	A temporary file to save chromInfo results
 CI=/tmp/chkWig_chromInfo.$$
 
-hgsql -N --host=hgwdev.soe.ucsc.edu --user=hguser --password=hguserstuff \
+hgsql -N --host=hgwdev.gi.ucsc.edu --user=hguser --password=hguserstuff \
 	-e "select * from chromInfo;" ${DB} > "${CI}"
 
 #	A temporary file to construct the bed intersection file
 
 BF=/tmp/chkWig_$$.bed
 
 #	Create two bed lines for each chrom
 #	chrN	0	10
 #	chrN	<chromEnd-10>	<chromEnd>
 
 awk '
 {
 	printf "%s\t0\t10\t%s_0\n", $1, $1
 	printf "%s\t%d\t%d\t%s_1\n", $1, $2-10, $2, $1
 }
 ' "${CI}" > "${BF}"
 
 WC=`cat "${BF}" | wc -l`
 
 if [ "${WC}" -lt 2 ]; then
     echo "ERROR: having trouble constructing the test bed file ?"
     echo "have the following chromInfo:  (should not be empty)"
     cat "${CI}"
 fi
 
 RF=/tmp/chkWig_${DB}.${TABLE}.$$
 HGDB_CONF=/tmp/chkWig_hg.conf.$$
 export HGDB_CONF
-echo "db.host=hgwdev.soe.ucsc.edu" > "${HGDB_CONF}"
+echo "db.host=hgwdev.gi.ucsc.edu" > "${HGDB_CONF}"
 echo "db.user=hguser" >> "${HGDB_CONF}"
 echo "db.password=hguserstuff" >> "${HGDB_CONF}"
 chmod 600 "${HGDB_CONF}"
 
 ${HGWIGGLE} -verbose=2 -db="${DB}" \
 	-bedFile="${BF}" "${TABLE}" > "${RF}" 2>&1
 
 WARN=`grep WARN "${RF}" | wc -l`
 
 rm -f "${CI}" "${BF}" "${HGDB_CONF}"
 
 if [ "${WARN}" -gt 0 ]; then
     echo "ERROR: there are ${WARN} coordinate problems"
     echo "Results file can be seen in: ${RF}"
 else