e435de108aa1574d959ee3fbc40d674f1bf49224 jcasper Mon Aug 26 15:32:43 2024 -0700 Replacing references to hgwdev.soe.ucsc.edu, as that server name is deprecated. no ticket diff --git src/product/installer/browserSetup.sh src/product/installer/browserSetup.sh index 0a64e33..9206cfa 100644 --- src/product/installer/browserSetup.sh +++ src/product/installer/browserSetup.sh @@ -86,35 +86,35 @@ RSYNCOPTS="" # alternative? # --include='*/' --exclude='wgEncode*.bam' hgdownload.soe.ucsc.edu::gbdb/hg19/ ./ -h # a flagfile to indicate that the cgis were installed successfully COMPLETEFLAG=/usr/local/apache/cgiInstallComplete.flag # on OSX by default we download a pre-compiled package that includes Apache/Mysql/OpenSSL # change this to 1 to rebuild all of these locally from tarballs BUILDEXT=${BUILDEXT:-0} # On OSX, by default download the CGIs as a binary package # change this to 1 to rebuild CGIs locally from tarball BUILDKENT=${BUILDKENT:-0} # URL of a tarball with a the binaries of Apache/Mysql/Openssl -BINPKGURL=http://hgwdev.soe.ucsc.edu/~max/gbInstall/mysqlApacheOSX_10.7.tgz +BINPKGURL=http://hgwdev.gi.ucsc.edu/~max/gbInstall/mysqlApacheOSX_10.7.tgz # URL of tarball with the OSX CGI binaries -CGIBINURL=http://hgwdev.soe.ucsc.edu/~max/gbInstall/kentCgi_OSX_10.7.tgz +CGIBINURL=http://hgwdev.gi.ucsc.edu/~max/gbInstall/kentCgi_OSX_10.7.tgz # URL of tarball with a minimal Mysql data directory -MYSQLDBURL=http://hgwdev.soe.ucsc.edu/~max/gbInstall/mysql56Data.tgz +MYSQLDBURL=http://hgwdev.gi.ucsc.edu/~max/gbInstall/mysql56Data.tgz # mysql/apache startup script URL, currently only for OSX STARTSCRIPTURL=https://raw.githubusercontent.com/maximilianh/browserInstall/master/browserStartup.sh # the -t option allows to download only the genome databases, not hgFixed/proteome/go/uniProt # by default, this is off, so we download hgFixed and Co. ONLYGENOMES=0 # ---- END GLOBAL DEFAULT SETTINGS ---- # ---- DEFAULT CONFIG FILES ------------------ # We need to initialize hg.conf and apache.conf for the browser. # They are inline so we do not create a dependency on another file # that has to be pushed to hgdownload when this script is updated # the read command always has an error exit code for here docs, so we deactivate # exit on error for a moment