aa7a4f9cc860e6f8ab0e9d24de61a12089bf2da4 max Tue Aug 27 05:27:58 2024 -0700 updating otto crontab, after email from Hiram diff --git src/hg/utils/otto/otto.crontab src/hg/utils/otto/otto.crontab index 2345c81..224de74 100644 --- src/hg/utils/otto/otto.crontab +++ src/hg/utils/otto/otto.crontab @@ -60,61 +60,69 @@ #dbVar 13 8 2 * * /hive/data/outside/otto/dbVar/dbVarWrapper.sh #Orphanet 10 7 10 * * /hive/data/outside/otto/orphanet/orphanetWrapper.sh #ClinVar MAILTO=otto-group@ucsc.edu 08 00 8 * * umask 002; /hive/data/outside/otto/clinvar/doUpdate.sh #MANE 11 5 * * 1 python3 /hive/data/outside/otto/mane/doMane.py #GenCC -11 5 * * 2 python3 /hive/data/outside/otto/genCC/doGenCC.py +8 16 * * 2 python3 /hive/data/outside/otto/genCC/doGenCC.py #OMIM 17 4 * * * /hive/data/outside/otto/omim/omimWrapper.sh 2>&1 #LOVD 14 13 * * mon /hive/data/outside/otto/lovd/doUpdate.sh #Mastermind 05 8 8 * * /hive/data/outside/otto/mastermind/buildMastermind.sh +# UniProt massive 110+ database update, takes 3-4 days. +#Format: Minute - Hour - DayofMonth month Day-of-week +MAILTO=max@soe.ucsc.edu,otto-group@ucsc.edu +00 07 26 * * /hive/data/outside/otto/uniprot/doUpdate.sh run + #wuhCor1 uniprot otto cron by Max, May 2021 00 4 * * * /hive/data/outside/otto/uniprot/covidCheck.sh #ClinGen 00 9 * * * /hive/data/outside/otto/clinGen/clinGenWrapper.sh #GRC Incident MAILTO=hiram@soe.ucsc.edu,otto-group@ucsc.edu 33 06 * * * /hive/data/outside/otto/grcIncidentDb/runUpdate.sh makeItSo # GenArk update hgcentral.genark table, once a week on Tuesday # the script itself sends email for notices about activity 37 10 * * 2 /hive/data/inside/GenArk/updateHgcentral.sh makeItSo #NCBI RefSeq 23 8 * * 3 /hive/data/outside/otto/ncbiRefSeq/ottoNcbiRefSeq.sh #Index page public session thumbnails update MAILTO=otto-group@ucsc.edu 11 1 * * 4 /cluster/software/bin/python3.6 /cluster/bin/scripts/buildPublicSessionThumbnailsIndexPage.py /usr/local/apache/htdocs/ #OMIM Upload HGDB_CONF=/cluster/home/otto/.hg.conf.beta 15 05 * * * /hive/data/outside/otto/omim/omimUploadWrapper.sh -# UniProt massive 110+ database update, takes 3-4 days. -#Format: Minute - Hour - DayofMonth month Day-of-week -MAILTO=max@soe.ucsc.edu,otto-group@ucsc.edu -00 11 16 * * /hive/data/outside/otto/uniprot/doUpdate.sh run +MAILTO=bwick@ucsc.edu +# Cell Browser news sec update by Matt/Brittney Sept 2022 +04 12 * * 1-5 ~bwick/miniconda3/bin/python3.8 ~bwick/cellBrowser/ucsc/updateNewsSec -r + +# Malacards update. Not done monthly, but running monthly anyways, as they don't have a fixed schedule #Format: Minute - Hour - DayofMonth month Day-of-week +MAILTO=mhaeussl@ucsc.edu +04 04 20 * * /hive/data/outside/otto/malacards/update.sh MAILTO=jbirgmei@ucsc.edu # PubTator3 dbSNP track update 28 08 * * * /bin/zsh -c 'cd /hive/data/outside/otto/pubtatorDbSnp && ./BUILD'