879450f84abeea7f424bde8ab9ad95669eef3b53 hiram Thu Sep 5 10:12:26 2024 -0700 upper case corrections refs #32596 diff --git src/hg/htdocs/assemblySearch.html src/hg/htdocs/assemblySearch.html index 160e959..88244d5 100755 --- src/hg/htdocs/assemblySearch.html +++ src/hg/htdocs/assemblySearch.html @@ -1,127 +1,127 @@ <!DOCTYPE HTML> <!--#set var="TITLE" value="Genome Assembly Search" --> <!--#set var="ROOT" value="" --> <!--#include virtual='$ROOT/inc/gbPageStartHardcoded.html' --> <link rel="stylesheet" type="text/css" href="<!--#echo var='ROOT' -->/style/assemblySearch.css"> <h1>Genome assembly search and request</h1> <hr> <form id="searchForm"> <div class="formDiv"> <!-- the entire form element --> <div> <!-- container div for search box and submit/clear buttons --> <label for="searchBox">Enter search term(s) to find assembly:</label> <input type="text" id="searchBox" name="searchBox" required> <div class="submitContainer"> <button id="submitSearch" type="submit">Search</button> <div id="loadingSpinner" class="spinner"></div> </div> <button type="button" id="clearSearch">Clear</button> - - <button type="button" id="advancedSearchButton">show advanced search options</button> + <button type="button" id="advancedSearchButton">Show advanced search options</button> <!-- mouse over this text to see pop-up help message --> - <span class="searchTip">advanced search help + <span class="searchTip">Advanced search help <span class="searchTiptext"> <!-- hidden span for pop-up help message --> <ol id="searchTipList" class="noBullets"> <li> + (plus) sign before <b>+word</b> to force included in result</li> <li> - (minus) sign before <b>-word</b> to exclude word from result</li> <li> * (asterisk) character at end of <b>word*</b> to make the word be a prefix search</li> <li> enclose "words in quotes" to form a phrase for the search</li> <li> all searches are case insensitive</li> <li> single word searches become prefix searches if the word does not match by itself </li> <!-- javaScript will add an extra element in debug mode to show the API reference --> </ol> </span> <!-- a hidden span for a pop-up help message --> </span> <span id="shareThisSearch"> - <a href="assemblySearch.html">share this search</a> + <a href="assemblySearch.html">Share this search</a> </span> <!-- URL argument maxItemsOutput to html page can change this --> <input type="hidden" id="maxItemsOutput" value="500"> </div> <!-- container div for search box and submit/clear buttons --> <div id="advancedSearchOptions" class="radioGroupContainer"> <div class="radioGroup"> <fieldset class="colVertical" onchange="optionsChange(event)"> - <legend>assembly view/request</legend> + <legend>Assembly view/request</legend> <label><input type="checkbox" id="mustExist" onclick="atLeastOneCheckBoxOn(this)" name="mustExist" value="mustExist" checked> - in available browsers + In available browsers </label><br> <label><input type="checkbox" id="notExist" onclick="atLeastOneCheckBoxOn(this)" name="notExist" value="notExist" checked> - can be requested + Can be requested </label> </fieldset> </div> <div class="radioGroup"> <fieldset class="colVertical" onchange="optionsChange(event)"> - <legend>assembly status</legend> - <label><input type="radio" name="asmStatus" value="latest" id="statusLatest"> latest</label> - <label><input type="radio" name="asmStatus" value="replaced" id="statusReplaced"> replaced</label> - <label><input type="radio" name="asmStatus" value="suppressed" id="statusSuppressed"> suppressed</label> - <label><input type="radio" name="asmStatus" value="statusAny" id="statusAny" checked> any status</label> + <legend>Assembly status</legend> + <label><input type="radio" name="asmStatus" value="latest" id="statusLatest"> Latest</label> + <label><input type="radio" name="asmStatus" value="replaced" id="statusReplaced"> Replaced</label> + <label><input type="radio" name="asmStatus" value="suppressed" id="statusSuppressed"> Suppressed</label> + <label><input type="radio" name="asmStatus" value="statusAny" id="statusAny" checked> Any status</label> </fieldset> </div> <div class="radioGroup"> <fieldset class="colVertical" onchange="optionsChange(event)"> <legend>RefSeq category</legend> - <label><input type="radio" name="refSeqCategory" value="reference" id="refSeqReference"> reference</label> - <label><input type="radio" name="refSeqCategory" value="representative" id="refSeqRepresentative"> representative</label> - <label><input type="radio" name="refSeqCategory" value="refSeqAny" id="refSeqAny" checked> any category</label> + <label><input type="radio" name="refSeqCategory" value="reference" id="refSeqReference"> Reference</label> + <label><input type="radio" name="refSeqCategory" value="representative" id="refSeqRepresentative"> Representative</label> + <label><input type="radio" name="refSeqCategory" value="refSeqAny" id="refSeqAny" checked> Any category</label> </fieldset> </div> <div class="radioGroup"> <fieldset class="colVertical" onchange="optionsChange(event)"> - <legend>assembly level</legend> - <label><input type="radio" name="asmLevel" value="complete" id="asmLevelComplete"> complete</label> - <label><input type="radio" name="asmLevel" value="chromosome" id="asmLevelChromosome"> chromosome</label> - <label><input type="radio" name="asmLevel" value="scaffold" id="asmLevelScaffold"> scaffold</label> - <label><input type="radio" name="asmLevel" value="contig" id="asmLevelContig"> contig</label> - <label><input type="radio" name="asmLevel" value="asmLevelAny" id="asmLevelAny" checked> any level</label> + <legend>Assembly level</legend> + <label><input type="radio" name="asmLevel" value="complete" id="asmLevelComplete"> Complete</label> + <label><input type="radio" name="asmLevel" value="chromosome" id="asmLevelChromosome"> Chromosome</label> + <label><input type="radio" name="asmLevel" value="scaffold" id="asmLevelScaffold"> Scaffold</label> + <label><input type="radio" name="asmLevel" value="contig" id="asmLevelContig"> Contig</label> + <label><input type="radio" name="asmLevel" value="asmLevelAny" id="asmLevelAny" checked> Any level</label> </fieldset> </div> <div class="radioGroup"> <fieldset class="colVertical" onchange="optionsChange(event)"> - <label><input type="radio" name="wordMatch" value="anyWord" id="anyWord"> may match any word</label> - <label><input type="radio" name="wordMatch" value="allWords" id="allWords" checked> must match all words</label> + <label><input type="radio" name="wordMatch" value="anyWord" id="anyWord"> May match any word</label> + <label><input type="radio" name="wordMatch" value="allWords" id="allWords" checked> Must match all words</label> </fieldset> </div> </div> <!-- the radioGroupContainer --> </div> <!-- the entire form element --> </form> <div> <!-- search results status line --> <span id="resultCounts"> </span> <span id="measureTiming">- <em>search time: </em><span id="elapsedTime">0 milliseconds</span>.</span> </div> <!-- search results status line --> <hr> <table id="dataTable" class="dataTable sorttable fifthRowHighlight" style="border: 1px solid black; display:block; max-width:1300px; position:sticky; top:0;"> <colgroup id='colDefinitions'> <col id='viewReq' style="width: 10%"> <col id='comName' style="width: 10%"> <col id='sciName' style="width: 10%"> <col id='asmId' style="width: 15%"> <col id='year' style="width: 5%"> <col id='clade' style="width: 8%"> <col id='description' style="width: 30%"> <col id='status' style="width: 12%"> </colgroup> <thead style="position:sticky; top:0; border:1px solid #ddd; width:100%" id="tableHeader"> <!-- table header rows are filled in by javaScript since they can be altered by the sorttable system and need to be refreshed --> <tr><td> </td></tr> </thead> <tbody id="tableBody"></tbody> </table> </hr> <div id="metaData"> </div> </hr> <hr /> <!--#include virtual='$ROOT/inc/garModal.html' --> </div><!-- closing gbsPage from gbPageStartHardcoded.html --> </div><!-- closing container-fluid from gbPageStartHardcoded.html --> <!--#include virtual="$ROOT/inc/gbFooterHardcoded.html"--> <script src="<!--#echo var='ROOT' -->/js/assemblySearch.js"></script> <script src="<!--#echo var='ROOT' -->/js/sorttable.js"></script> </body></html>