a78b9ac5c45442e8abe55148cf9b2dab8df792b3
gperez2
  Thu Oct 3 17:00:26 2024 -0700
Updating the preserveInput setting name and info on hgLiftOver, refs #28023

diff --git src/hg/hgLiftOver/hgLiftOver.c src/hg/hgLiftOver/hgLiftOver.c
index 1017169..750c885 100644
--- src/hg/hgLiftOver/hgLiftOver.c
+++ src/hg/hgLiftOver/hgLiftOver.c
@@ -139,35 +139,35 @@
 cgiMakeDoubleVar(HGLFT_MINMATCH, (keepSettings) ? minMatch : chain->minMatch,6);
 puts(" ");
 printInfoIcon("The minimum ratio of basepairs of the input region covered by an alignment. Regions scoring lower than this will not be lifted at all.");
 cgiTableFieldEnd();
 cgiTableRowEnd();
 
 cgiSimpleTableRowStart();
 cgiTableRowEnd();
 
 
 cgiSimpleTableRowStart();
 cgiTableField("<B>Regions defined by chrom:start-end (BED 4 to BED 6)</B>");
 cgiTableRowEnd();
 
 cgiSimpleTableRowStart();
-cgiTableField("Prepend input positions to item names:");
+cgiTableField("Keep original positions in output:");
 cgiSimpleTableFieldStart();
 cgiMakeCheckBox(HGLFT_EXTRA_NAME_INFO,extraNameInfo);
 puts("&nbsp;");
-printInfoIcon("Lifted items will include their original positions as part of their output names to assist in determining what got mapped where (in case multiple items have the same name in the input).  Coordinates are 1-based fully closed, so the BED entry &quot;chr1 100 150 item1&quot; will be labeled &quot;chr1:101-150:item1&quot;.");
+printInfoIcon("Lifted items for BED4 and up will include their original positions as part of their output names to assist in determining what got mapped where (in case multiple items have the same name in the input).  Coordinates are 1-based fully closed, so the BED entry &quot;chr1 100 150 item1&quot; will be labeled &quot;chr1:101-150:item1&quot;.");
 cgiTableFieldEnd();
 cgiTableRowEnd();
 
 cgiSimpleTableRowStart();
 cgiTableField("Allow multiple output regions:");
 cgiSimpleTableFieldStart();
 cgiMakeCheckBox(HGLFT_MULTIPLE,multiple);
 puts("&nbsp;");
 printInfoIcon("By default, input regions that map to multiple regions will not be lifted at all. When this option is checked, all targets are output.");
 cgiTableFieldEnd();
 cgiTableRowEnd();
 
 cgiSimpleTableRowStart();
 cgiTableField("&nbsp;&nbsp;Minimum hit size in query:");
 cgiSimpleTableFieldStart();