8f29deda5ff897fbf1d208907ac7f734afc07ed2 jcasper Tue Oct 1 20:31:17 2024 -0700 Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023 diff --git src/hg/liftOver/tests/input/genePredPreserve.gp src/hg/liftOver/tests/input/genePredPreserve.gp new file mode 100644 index 0000000..3e70e87 --- /dev/null +++ src/hg/liftOver/tests/input/genePredPreserve.gp @@ -0,0 +1,3 @@ +uc001aaa.3 chr1 + 11873 14409 11873 11873 3 11873,12612,13220, 12227,12721,14409, 0 DDX11L1 +uc010nxr.1 chr1 + 11873 14409 11873 11873 3 11873,12645,13220, 12227,12697,14409, 0 DDX11L1 +uc010nxq.1 chr1 + 11873 14409 12189 13639 3 11873,12594,13402, 12227,12721,14409, 0 DDX11L1