8f29deda5ff897fbf1d208907ac7f734afc07ed2
jcasper
  Tue Oct 1 20:31:17 2024 -0700
Many liftOver functions now have a preserveInput argument, which appends the input
position to the name field.  This makes it easier to see what got mapped where.  The option is made available through a
command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023

diff --git src/hg/liftOver/tests/input/gtfPreserve.gtf src/hg/liftOver/tests/input/gtfPreserve.gtf
new file mode 100644
index 0000000..61dedca
--- /dev/null
+++ src/hg/liftOver/tests/input/gtfPreserve.gtf
@@ -0,0 +1,5 @@
+chr1    hg38_knownCanonical exon    11106535    11262507    0.000000    .   .   gene_id "gene1"; transcript_id "tx1"; 
+chr1    hg38_knownCanonical exon    11143898    11149537    0.000000    .   .   gene_id "gene2"; transcript_id "tx2"; 
+chr1    hg38_knownCanonical exon    11152350    11152452    0.000000    .   .   gene_id "gene3"; transcript_id "tx3"; 
+chr1    hg38_knownCanonical exon    11189341    11195981    0.000000    .   .   gene_id "gene4"; transcript_id "tx4"; 
+chr1    hg38_knownCanonical exon    11226254    11226360    0.000000    .   .   gene_id "gene5"; transcript_id "tx5";