40bc5fed1c6cee7d147e2180d40dd1be5d907c42 jnavarr5 Fri Oct 4 13:13:39 2024 -0700 Adding knownGene and knownGeneArchive relations on the trackUi page, refs #33232 diff --git src/hg/makeDb/trackDb/relatedTracks.ra src/hg/makeDb/trackDb/relatedTracks.ra index 8e61792..a511cb9 100644 --- src/hg/makeDb/trackDb/relatedTracks.ra +++ src/hg/makeDb/trackDb/relatedTracks.ra @@ -1,19 +1,22 @@ # A space delimited file of track relatedness, format: # ucscDb track trackLinkingTo reason # hg38: +hg38 knownGene knownGeneArchive View previous versions of GENCODE Genes +hg38 knownGeneArchive knownGene View the latest GENCODE Genes version + hg38 miRnaAtlas nonCodingRNAs View associated precursor miRnas hg38 nonCodingRNAs miRnaAtlas View expression of cleaved miRnas hg38 caddSuper gnomad View associated variants hg38 gnomad caddSuper View CADD scores for this variant and region hg38 revel liftHg38 Revel is based on hg19 and lifted to hg38. liftOver "chain" alignment from hg19 to hg38 hg38 liftHg38 revel Revel scores were lifted using UCSC liftOver chains from hg38 hg38 revel caddSuper CADD, a similar deleteriousness score, and not used as an input by REVEL hg38 caddSuper revel REVEL, a similar deleteriousness score hg38 liftHg19 grcIncidentDb GRC Incident database, to explore reasons why the assembly was changed hg38 grcIncidentDb liftHg19 LiftOver for hg38, explores how incident regions aligned between human assemblies