d17de827f8a48028011db1e75e34d33fa31ff3eb
jnavarr5
  Fri Oct 4 16:45:18 2024 -0700
Adding the relation between GENCODE Genes and the GENCODE archive for mm39, refs #33232

diff --git src/hg/makeDb/trackDb/relatedTracks.ra src/hg/makeDb/trackDb/relatedTracks.ra
index a511cb9..24ef95e 100644
--- src/hg/makeDb/trackDb/relatedTracks.ra
+++ src/hg/makeDb/trackDb/relatedTracks.ra
@@ -47,15 +47,20 @@
 
 hg19 fixSeqLiftOverPsl liftHg38 Investigate how patches affect the whole-genome alignment used for liftOver
 hg19 liftHg38 fixSeqLiftOverPsl Investigate how assembly patches affect the liftOver alignment
 
 hg19 liftHg38 hg38ContigDiff Hg38 Diff shows contigs that were changed from hg19 to hg38
 hg19 hg38ContigDiff liftHg38 Investigate how contig changes affect the liftOver alignments
 
 hg19 jaspar ReMap ReMap is a database of TF binding sites inferred from ChIP-Seq Data. Unlike JASPAR predictions, these sites are supported by functional assay
 hg19 ReMap jaspar JASPAR is a database of predicted TF binding sites, based on short DNA matches. Unlike ReMap, the data is purely computational.
 
 hg19 ReMap liftHg38 NCBI ReMap, even though it has the same name, is a liftOver-like hg19/hg38 alignment, and unrelated to the ReMap database
 hg19 liftHg38 ReMap ReMap, even though it has the same name, is a database of transcription factor binding sites, unrelated to NCBI ReMap
 
 hg19 refSeqComposite pseudoYale60 NCBI RefSeq Curated and RefSeq Other contains pseudogenes, but the Yale annotation should be more comprehensive for this transcript type
 hg19 pseudoYale60 refSeqComposite NCBI RefSeq Curated and RefSeq Other also contain some transcribed and untranscribed pseudogenes, respectively.
+
+# mm39:
+
+mm39 knownGene knownGeneArchive View previous versions of GENCODE Genes
+mm39 knownGeneArchive knownGene View the latest GENCODE Genes version