6f8907ff0e4a54c394521dbb4219d40fd98822d2 hiram Thu Sep 19 15:05:38 2024 -0700 eliminate items that should not be here refs #34337 diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index 0b88064..f2531f3 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -294,127 +294,115 @@ GCA_947347685.1_fPlePla1.1 fish GCA_949774975.1_mLagAlb1.1 mammals GCA_949987515.1_mDelDel1.1 mammals GCA_949987535.1_mBalAcu1.1 mammals GCA_950005125.1_mChiNiv1.1 mammals GCA_950295315.1_mEriEur2.1 mammals GCA_958295425.1_fSolSol10.1 fish GCA_963082965.1_fCarCar2.1 fish GCA_963259705.1_mMyoDau2.1 mammals GCA_963514075.1_fConCon1.1 fish GCF_000001405.39_GRCh38.p13 primates GCF_000001405.40_GRCh38.p14 primates GCF_000001635.26_GRCm38.p6 mammals GCF_000001735.3_TAIR10 plants GCF_000002435.1_GL2 invertebrate -GCF_000002435.2_UU_WB_2.1 invertebrate GCF_000002595.1_v3.0 plants GCF_000002775.4_Pop_tri_v3 plants GCF_000002855.3_ASM285v2 fungi GCF_000002945.1_ASM294v2 fungi -GCF_000002945.2_ASM294v3 fungi GCF_000002995.3_ASM299v2 invertebrate GCF_000004335.2_AilMel_1.0 mammals GCF_000004515.4_Glycine_max_v2.0 plants GCF_000004515.5_Glycine_max_v2.1 plants GCF_000004555.1_ASM455v1 invertebrate GCF_000004665.1_Callithrix_jacchus-3.2 primates -GCF_000005575.2_AgamP3 invertebrate GCF_000005975.2_dyak_caf1 invertebrate GCF_000006175.1_ASM617v2 archaea GCF_000090795.1_v1.0 invertebrate GCF_000091225.1_ASM9122v1 fungi GCF_000143185.1_v1.0 fungi GCF_000149645.2_ASM14964v3 fungi GCF_000164845.3_VicPac3.1 mammals GCF_000165045.1_Callorhinchus_milii-6.1.3 vertebrate GCF_000181695.1_ASM18169v1 fungi GCF_000182805.2_ASM18280v2 fungi GCF_000188115.4_SL3.0 plants GCF_000189315.1_Devil_ref_v7.0 mammals GCF_000203795.1_v1.0 fungi -GCF_000208615.1_JCVI_ISG_i3_1.0 invertebrate GCF_000208655.1_Dasnov3.0 mammals -GCF_000209185.1_CulPip1.0 invertebrate GCF_000215625.1_MusPutFur1.0 mammals GCF_000231095.1_Oryza_brachyantha.v1.4b plants GCF_000235385.1_SaiBol1.0 primates GCF_000236235.1_SpeTri2.0 mammals GCF_000241765.3_Chrysemys_picta_bellii-3.0.3 vertebrate GCF_000241765.4_Chrysemys_picta_BioNano-3.0.4 vertebrate GCF_000255335.1_Mocc_1.0 invertebrate GCF_000264685.3_Panu_3.0 primates GCF_000300575.1_Agabi_varbisH97_2 fungi GCF_000326865.1_Helobdella_robusta_v1.0 invertebrate GCF_000340665.1_C.cajan_V1.0 plants GCF_000341935.1_Ccin1 invertebrate GCF_000344595.1_CheMyd_1.0 vertebrate GCF_000364345.1_Macaca_fascicularis_5.0 primates GCF_000365465.2_Ptep_2.0 invertebrate GCF_000442215.1_Lipotes_vexillifer_v1 mammals -GCF_000457365.1_ASM45736v1 invertebrate GCF_000471905.2_AMTR1.0 plants GCF_000495115.1_PopEup_1.0 plants -GCF_000499545.1_ETH001 invertebrate GCF_000503995.1_CerSol_1.0 invertebrate GCF_000507465.1_Kwon_mang_CBS8507_V2 fungi -GCF_000507465.2_ASM50746v4 fungi GCF_000511025.2_RefBeet-1.2.2 plants GCF_000512565.1_Cryp_deje_CBS10117_V1 fungi -GCF_000512565.2_ASM51256v3 fungi GCF_000512585.1_Cryp_best_CBS10118_V1 fungi -GCF_000512585.2_ASM51258v3 fungi GCF_000687205.1_ASM68720v1 birds GCF_000690535.1_ASM69053v1 birds GCF_000691845.1_ASM69184v1 birds GCF_000695815.1_ASM69581v1 birds GCF_000697945.2_Focc_2.1 invertebrate GCF_000699005.1_ASM69900v1 birds GCF_000699245.1_ASM69924v1 birds GCF_000699445.2_SchHae_2.0 invertebrate GCF_000700745.1_ASM70074v1 birds GCF_000709325.1_ASM70932v1 birds GCF_000709365.1_ASM70936v1 birds GCF_000738735.2_ASM73873v2 birds GCF_000738735.5_ASM73873v5 birds GCF_000747805.1_ChaPel_1.0 birds GCF_000764305.1_Hazt_2.0 invertebrate GCF_000801105.1_Rs1.0 plants GCF_000806345.1_ASM80634v1 invertebrate GCF_000817695.2_Aradu1.1 plants GCF_000836235.1_Pxut_1.0 invertebrate GCF_000951615.1_common_carp_genome fish GCF_001194135.1_Octopus_bimaculoides_v2_0 invertebrate -GCF_001457755.1_Trypanosoma_equiperdum_OVI_V2 invertebrate GCF_001458135.1_marMar2.1 mammals GCF_001483705.1_ASM148370v1 invertebrate GCF_001531365.1_CcrdV1 plants GCF_001577835.1_Coturnix_japonica_2.0 birds GCF_001594065.1_Ccosl1.0 invertebrate GCF_001594075.1_Tcor1.0 invertebrate GCF_001633185.1_ValleyOak3.0 plants GCF_001640805.1_ASM164080v1 fish GCF_001649575.1_ASM164957v1 fish GCF_001652005.1_ASM165200v1 invertebrate GCF_001659605.1_Manihot_esculenta_v6 plants GCF_001660625.1_IpCoco_1.2 fish GCF_001660625.2_IpCoco_1.2 fish GCF_001663975.1_Xenopus_laevis_v2 vertebrate GCF_001687245.1_Rhagoletis_zephyria_1.0 invertebrate GCF_001698545.1_ASM169854v1 primates GCF_001704415.1_ARS1 mammals -GCF_001720195.1_ASM172019v2 fungi GCF_001890085.1_ASM189008v1 mammals GCF_001891065.1_H_comes_QL1_v1 fish GCF_002007445.1_ASM200744v2 mammals GCF_002021735.1_Okis_V1 fish GCF_002093755.1_Dser1.0 invertebrate GCF_002099425.1_phaCin_unsw_v4.1 mammals GCF_002162155.1_WEW_v2.0 plants GCF_002201575.1_ASM220157v1 mammals GCF_002263795.1_ARS-UCD1.2 mammals GCF_002263795.2_ARS-UCD1.3 mammals GCF_002443255.1_Vdes_3.0 invertebrate GCF_002532875.1_vjacob_1.0 invertebrate GCF_002571385.1_Stylophora_pistillata_v1 invertebrate GCF_002706865.1_ASM270686v1 invertebrate GCF_002776525.2_ASM277652v2 primates @@ -436,31 +424,30 @@ GCF_003668045.1_CriGri-PICR mammals GCF_003676075.1_ASM367607v1 mammals GCF_003676075.2_GSC_YBM_2.0 mammals GCF_003710045.1_USU_Nmel_1.2 invertebrate GCF_003945595.1_ASM394559v1 birds GCF_003957565.1_bTaeGut1_v1.p birds GCF_004011695.1_Arabiei_Me14 fungi GCF_004027225.1_bStrHab1_v1.p birds GCF_004115215.1_mOrnAna1.p.v1 mammals GCF_004115265.1_mRhiFer1_v1.p mammals GCF_004118075.1_ASM411807v1 plants GCF_004126475.1_mPhyDis1_v1.p mammals GCF_004153925.1_Obicornis_v3 invertebrate GCF_004193835.1_ASM419383v1 invertebrate GCF_004193835.2_ASM419383v2 invertebrate -GCF_004337985.1_PpBr36 fungi GCF_004382195.1_ASM438219v1 invertebrate GCF_004664715.1_Pero_0.1 mammals GCF_005281655.1_TAMU_Nfulva_1.0 invertebrate GCF_005508785.1_pea_aphid_22Mar2018_4r6ur invertebrate GCF_006149115.1_Oner_1.0 fish GCF_006496715.1_Aalbo_primary.1 invertebrate GCF_007474595.1_mLynCan4_v1.p mammals GCF_008315115.1_SLUC_FBN_1 fish GCF_008629635.1_Kwon_shan_CBS_12478_V1 fungi GCF_008831285.1_ASM883128v1 plants GCF_009650485.1_drosAlbom15112-1751.03v1 invertebrate GCF_009764565.2_rDerCor1.pri.v3 vertebrate GCF_009819885.1_bCatUst1.pri birds GCF_009828535.1_HMol primates GCF_009828535.2_HMol_V2 primates @@ -469,44 +456,42 @@ GCF_010614865.1_ASM1061486v1 invertebrate GCF_010645085.1_ASM1064508v1 vertebrate GCF_010909765.1_sAmbRad1.pri vertebrate GCF_011064685.1_ZJU_Sfru_1.0 invertebrate GCF_011947565.2_Ppol_2 invertebrate GCF_012460135.1_BPBGC_Mater_1.0 birds GCF_013339695.1_ASM1333969v1 invertebrate GCF_013339745.1_ASM1333974v1 invertebrate GCF_013377495.1_Cygnus_atratus_primary_v1.0 birds GCF_014356525.1_ASM1435652v1 invertebrate GCF_014805625.1_Yale_Gfus_2 invertebrate GCF_014824575.1_WHU_Shon_v2 mammals GCF_014898055.1_MPIMG_talOcc4 mammals GCF_014898055.2_MPIMG_talOcc4v2 mammals GCF_014905685.1_NemWhi1 fish -GCF_015104395.2_ASM1510439v2 invertebrate GCF_015227805.1_bHirRus1.pri.v2 birds GCF_015228065.1_NSTDA_Pmon_1 invertebrate GCF_015237465.1_rCheMyd1.pri vertebrate GCF_016086655.2_UVic_Lsal_1.1 invertebrate GCF_016699345.1_BCM_Sbol_2.0 primates GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w birds GCF_016746245.1_Prin_Dsan_1.0 invertebrate GCF_016746365.1_Prin_Dyak_Tai18E2_2.0 invertebrate GCF_016746395.1_Prin_Dsim_3.0 invertebrate GCF_016801865.1_TS_Cpip_V1 invertebrate GCF_016920785.1_Ixodes_scapularus_ComboLowHiFi invertebrate GCF_017639655.1_bFalNau1.pat birds -GCF_017916335.1_LU_Lori_1.0 invertebrate GCF_021218885.1_Marmota_monax_Labrador192_V1.0 mammals GCF_021288785.1_ASM2128878v2 mammals GCF_022539665.1_CSIRO_AGI_Dcar_v0.2 invertebrate GCF_023065955.1_UrsArc1.0 mammals GCF_023343755.1_ASM2334375v1 fungi GCF_027563975.1_ilPloInte3.1 invertebrate GCF_028858775.1_NHGRI_mPanTro3-v1.1-hic.freeze_pri primates GCF_028878055.1_NHGRI_mSymSyn1-v1.1-hic.freeze_pri primates GCF_028878055.2_NHGRI_mSymSyn1-v2.0_pri primates GCF_028885625.1_NHGRI_mPonPyg2-v1.1-hic.freeze_pri primates GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri primates GCF_029281585.1_NHGRI_mGorGor1-v1.1-0.2.freeze_pri primates GCF_029289425.1_NHGRI_mPanPan1-v1.1-0.1.freeze_pri primates GCF_900094665.1_CAROLI_EIJ_v1.1 mammals GCF_900246225.1_fAstCal1.2 fish