6a74ea5eb50dd8b835d28650e1b235bb38245a02
hiram
  Sun Sep 22 12:58:11 2024 -0700
correct quote for githubusercontent reference refs #34449

diff --git src/hg/utils/automation/doNcbiRefSeq.pl src/hg/utils/automation/doNcbiRefSeq.pl
index ab28dea..a7ff0a1 100755
--- src/hg/utils/automation/doNcbiRefSeq.pl
+++ src/hg/utils/automation/doNcbiRefSeq.pl
@@ -776,31 +776,31 @@
     | grep -Fwf \$db.noRna.available.list \\
       | egrep "$nonNucNames" > missingChrMFa.psl
   if [ -s missingChrMFa.psl ]; then
     pslToBed missingChrMFa.psl stdout \\
       | twoBitToFa -bed=stdin \$target2bit stdout >> \$db.rna.fa
   fi
 fi
 
 if [ -s process/\$asmId.rna.cds ]; then
   cat process/\$asmId.rna.cds | grep '[0-9]\\+\\.\\.[0-9]\\+' \\
     | pslMismatchGapToBed -cdsFile=stdin -db=\$db -ignoreQNamePrefix=X \\
       process/\$asmId.\$db.psl.gz \$target2bit \\
         \$db.rna.fa ncbiRefSeqGenomicDiff || true
 
   if [ -s ncbiRefSeqGenomicDiff.bed ]; then
-    wget -O txAliDiff.as 'https://raw.githubusercontent.com/ucscGenomeBrowser/kent/refs/heads/master/src/hg/lib/txAliDiff.as"
+    wget -O txAliDiff.as 'https://raw.githubusercontent.com/ucscGenomeBrowser/kent/refs/heads/master/src/hg/lib/txAliDiff.as'
     bedToBigBed -type=bed9+ -tab -as=txAliDiff.as \\
       ncbiRefSeqGenomicDiff.bed \$db.chrom.sizes ncbiRefSeqGenomicDiff.bb
   else
     rm -f ncbiRefSeqGenomicDiff.bed
   fi
 fi
 
 export totalBases=`ave -col=2 \$db.chrom.sizes | grep "^total" | awk '{printf "%d", \$2}'`
 export basesCovered=`bedSingleCover.pl \$db.ncbiRefSeq.bigGp | ave -col=4 stdin | grep "^total" | awk '{printf "%d", \$2}'`
 export percentCovered=`echo \$basesCovered \$totalBases | awk '{printf "%.3f", 100.0*\$1/\$2}'`
 printf "%d bases of %d (%s%%) in intersection\\n" "\$basesCovered" \\
    "\$totalBases" "\$percentCovered" > fb.ncbiRefSeq.\$db.txt
 printf "%d bases of %d (%s%%) in intersection\\n" "\$baseCount" "\$asmSizeNoGaps" "\$perCent" > fb.\$asmId.ncbiRefSeq.txt
 
 rm -f \$db.ncbiRefSeq.bigGp \$asmId.exons.bed