05e67c59a20a5d00b810a981aef3b00c5bef82e1
max
  Fri Sep 20 06:03:18 2024 -0700
more features to hubtools: search in both parent and subdirs, better docs

diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c
index 71c1f64..b6eac01 100644
--- src/hg/hgc/hgc.c
+++ src/hg/hgc/hgc.c
@@ -5166,35 +5166,41 @@
 
 boolean forestHasUnderstandableTrack(char *db, struct trackDb *tdb)
 // TRUE if any leaf is usable in getting DNA.
 {
 return (rFindUnderstandableTrack(db, tdb) != NULL);
 }
 
 struct trackDb* loadTracks()
 /* load native tracks, cts, userPsl and track Hubs and return tdbList */
 {
 struct trackDb *tdbList = hTrackDb(database);
 struct trackDb *ctdbList = tdbForCustomTracks();
 struct trackDb *utdbList = tdbForUserPsl();
 
 struct grp *pGrpList = NULL;
-struct trackDb *hubList = hubCollectTracks(database, &pGrpList);
 
 ctdbList = slCat(ctdbList, tdbList);
+
+//if (! trackHubDatabase(database)) 
+    //{
+    struct trackDb *hubList = hubCollectTracks(database, &pGrpList);
     ctdbList = slCat(ctdbList, hubList);
+    //}
+
 tdbList = slCat(utdbList, ctdbList);
+
 return tdbList;
 }
 
 
 void doGetDnaExtended1()
 /* Do extended case/color get DNA options. */
 {
 boolean revComp  = cartUsualBoolean(cart, "hgSeq.revComp", FALSE);
 boolean maskRep  = cartUsualBoolean(cart, "hgSeq.maskRepeats", FALSE);
 int padding5     = cartUsualInt(cart, "hgSeq.padding5", 0);
 int padding3     = cartUsualInt(cart, "hgSeq.padding3", 0);
 int lineWidth    = cartUsualInt(cart, "lineWidth", 60);
 char *casing     = cartUsualString(cart, "hgSeq.casing", "");
 char *repMasking = cartUsualString(cart, "hgSeq.repMasking", "");
 boolean caseUpper= FALSE;