0f3ca3eaf5792df01b7c600a5428d2d0b2809fcd
max
  Fri Sep 20 13:18:01 2024 -0700
Revert "more features to hubtools: search in both parent and subdirs, better docs"

This reverts commit 05e67c59a20a5d00b810a981aef3b00c5bef82e1.

diff --git src/hg/makeDb/trackDb/buildTrix src/hg/makeDb/trackDb/buildTrix
index e570c25..c0e7e48 100755
--- src/hg/makeDb/trackDb/buildTrix
+++ src/hg/makeDb/trackDb/buildTrix
@@ -1,58 +1,58 @@
 #!/bin/bash -e
 usage='buildTrix trixName metaDbName path_to_cv.ra outputMachine outputPath ${DBS}'
 
 if [ $# -lt 6 ] ; then
     echo "wrong # args: $usage" >&2
     exit 1
 fi
 
 trixName="$1"; shift
 metaDbName="$1" ; shift
 cvRaPath="$1" ; shift
 outMachine="$1" ; shift
 outPath="$1" ; shift
 dbs="$@"
 
 # check if a database exists, print note and return non-zero if it doesn't
 dbExists() {
     local db="$1"
     local dbChk=$(hgsql -Ne 'show databases like "'$db'"')
     if [ -z "$dbChk" ] ; then
         echo "Note: database $db does not exist, skipping"
         return 1
     else
         return 0
     fi
 }
 
 buildDbTrix() {
     local db="$1"
     local trixName="$2"
     local metaDbName="$3"
     local cvRaPath="$4"
     local outPath="$5"
     local tmpFile=`mktemp`;
     local tmpFile2=`mktemp`;
     local tmpFile3=`mktemp`;
     makeTrackIndex $db $metaDbName $cvRaPath > $tmpFile;
     if test -s $tmpFile; then
-        ixIxx -verbose=2 -maxWordLength=64 $tmpFile $tmpFile2 $tmpFile3
+        ixIxx -maxWordLength=64 $tmpFile $tmpFile2 $tmpFile3
         # trixContextIndex makes the $db_$trixName.offsets and $db_$trixName.offsets.ixx files:
         trixContextIndex $tmpFile ${db}_${trixName}
         chmod 664  $tmpFile2 $tmpFile3 $tmpFile ${db}_${trixName}.offsets ${db}_${trixName}.offsets.ixx
         rsync -a $tmpFile2 $outMachine:$outPath/${db}_${trixName}.ix
         rsync -a $tmpFile3 $outMachine:$outPath/${db}_${trixName}.ixx
         # these three are for snippets on search pages:
         rsync -a $tmpFile $outMachine:$outPath/${db}_${trixName}.txt
         rsync -a ${db}_${trixName}.offsets $outMachine:$outPath/${db}_${trixName}.offsets
         rsync -a ${db}_${trixName}.offsets.ixx $outMachine:$outPath/${db}_${trixName}.offsets.ixx
         rm -f ${db}_${trixName}.offsets ${db}_${trixName}.offsets.ixx
     fi
     rm -f $tmpFile $tmpFile2 $tmpFile3
 }
 
 for db in $dbs ; do
     if dbExists $db ; then
         buildDbTrix $db $trixName $metaDbName $cvRaPath $outPath
     fi
 done