ab7e6d991f9378a256768008d3f98458c748af21 jnavarr5 Tue Sep 24 13:04:06 2024 -0700 Announcing the NuMTs track for hg38, refs #34302 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 30605d4..030e03d 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -54,30 +54,51 @@ <p>You can sign-up to get these announcements via our <a target=_blank href="https://groups.google.com/a/soe.ucsc.edu/g/genome-announce?hl=en">Genome-announce</a> email list. We send around one short announcement email every two weeks.</p> <p>Smaller software changes are not announced here. A summary of the three-weekly release changes can be found <a target=_blank href="https://genecats.gi.ucsc.edu/builds/versions.html">here</a>. For the full list of our daily code changes head to our <a href="https://github.com/ucscGenomeBrowser/kent/commits/master" target=_blank>GitHub page</a>. Lastly, see our <a href="credits.html" target="_blank"> credits page</a> for acknowledgments of the data we host.</p> <!-- ============= 2024 archived news ============= --> <a name="2024"></a> +<a name="092424"></a> +<h2>Sept. 24, 2024 Nuclear mitochondrial DNA segments (NuMTs) for hg38</h2> +<p> +We are happy to announce the release of a new track, +<a href="/cgi-bin/hgTrackUi?db=hg38&position=default&g=nuMtSeq">NuMTs Sequence</a>, +for human assembly (GRCh38/hg38). This track is a collection of Nuclear mitochondrial DNA segments, +provided in BED format with the BED score representing the alignment confidence. The BED score is +calculated by -10log10(E-value) and is reflected in the greyscale value. Scores >=100 are +colored black. It is important to note that when a NuMT is a merged result, the score is taken as +the highest score among all results.</p> + +<p> +For more detailed information on the methods used for detecting NuMTs, please visit the +following webpage:<br> +<a href="https://github.com/Koumokuyou/NUMTs">https://github.com/Koumokuyou/NUMTs</a></p> + +<p> +We would like to thank Martin Frith and Huang Muyao for generating and building the original +NuMTs track hub. We would also like to thank Megna Chalamala and Jairo Navarro for wrangling and +building the internal UCSC track for hg38.</p> + <a name="091024"></a> <h2>Sept. 10, 2024 Two new public hubs: ENIGMA VCEP and BRCAExchange</h2> <p> We are excited to announce the addition of two new hubs to the <a href="/cgi-bin/hgHubConnect?#publicHubs" target="_blank">Public Hubs</a> page. </p> <p> The <a href="/cgi-bin/hgTracks?genome=hg38&position=default&hubUrl=https://brcaexchange.org/trackhubs/hub.txt" target="blank"><b>BRCAExchange</b></a> track hub presents the variants from <a href ="https://brcaexchange.org/" target="_blank">BRCA Exchange</a> in the context of the human genome, offering further details on each variant in the variant details pages. This set of variants is obtained by integrating data from genomic variation repositories including ClinVar, LOVD and gnomAD, and annotating these variants according to methods selected and developed in close collaboration with the ENIGMA Consortium, the international expert consortium on research on HBOC variants.