691aa9e2e4f42cd650b092d338eb7bf67ce97bc4
gperez2
  Sun Oct 27 18:52:19 2024 -0700
Nesting DECIPHER tracks into a single superTrack, refs #34702

diff --git src/hg/makeDb/trackDb/human/decipher.alpha.ra src/hg/makeDb/trackDb/human/decipher.alpha.ra
new file mode 100644
index 0000000..885b591
--- /dev/null
+++ src/hg/makeDb/trackDb/human/decipher.alpha.ra
@@ -0,0 +1,56 @@
+track decipherContainer
+superTrack on
+shortLabel DECIPHER
+longLabel DECIPHER
+group phenDis
+
+    track decipher
+    shortLabel DECIPHER CNVs
+    longLabel DECIPHER CNVs
+    group phenDis
+    visibility pack
+    type bigBed 9 +
+    itemRgb on
+    tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw
+    bigDataUrl /gbdb/$D/decipher/decipherCnv.bb
+    url https://www.deciphergenomics.org/patient/$$
+    urlLabel Decipher Patient View:
+    filter.size 0
+    filterByRange.size on
+    filterLimits.size 2:170487333
+    filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip
+    filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown
+    mergeSpannedItems on
+    searchIndex name
+    mouseOverField _mouseOvera
+    html decipher
+    parent decipherContainer
+
+    track decipherSnvs
+    shortLabel DECIPHER SNVs
+    longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs)
+    group phenDis
+    visibility pack
+    color 0,0,0
+    type bed 4
+    tableBrowser off decipherSnvsRaw
+    prevExonText Left edge
+    nextExonText Right edge
+    html decipher
+    parent decipherContainer
+
+searchTable decipher
+searchMethod exact
+searchType bigBed
+
+searchName decipherId
+searchTable decipher
+termRegex [0-9]+
+searchType bed
+searchPriority 50
+
+searchName decipherSnvsId
+searchTable decipherSnvs
+termRegex [0-9]+
+searchType bed
+searchPriority 50