e971cb3711d443360ac4a480b8dca4322b559cfa
hiram
  Wed Oct 23 16:54:01 2024 -0700
no longer send out hub.txt files, obsolete refs #34689

diff --git src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh
index 9a53475..5c64856 100755
--- src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh
+++ src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh
@@ -1,103 +1,104 @@
 #!/bin/bash
 
 set -beEu -o pipefail
 
 if [ $# -ne 1 ]; then
   printf "usage: ./sendToHgdownload.sh <GCF/012/345/678/GCF_012345678.nn>\n" 1>&2
   exit 255
 fi
 
 export dirPath="${1}"
 export accession=`basename ${dirPath}`
 # hgdownload1 returns to service 02 April 2024, push to both machines
 export downloadDest1="hgdownload1.soe.ucsc.edu"
 export downloadDest2="hgdownload2.soe.ucsc.edu"
 # 2024-02-06 hgdownload2.gi.ucsc.edu has address 128.114.198.53
 # 2024-04-03
 # host hgdownload1.gi.ucsc.edu
 # Host hgdownload1.gi.ucsc.edu not found: 3(NXDOMAIN)
 # host hgdownload1.soe.ucsc.edu
 # hgdownload1.soe.ucsc.edu has address 128.114.119.163
 
 # host hgdownload2.gi.ucsc.edu
 # hgdownload2.gi.ucsc.edu has address 128.114.198.53
 # host hgdownload2.soe.ucsc.edu
 # hgdownload2.soe.ucsc.edu is an alias for hgdownload2.gi.ucsc.edu.
 # hgdownload2.gi.ucsc.edu has address 128.114.198.53
 
 ## verify no broken symlinks
 export srcDir="/hive/data/genomes/asmHubs/${dirPath}"
 if [ ! -d "${srcDir}" ]; then
    printf "# WARNING: no srcDir: '%s'\n" "${srcDir}" 1>&2
    exit 0
 fi
 
 badLinks=`(find "${srcDir}" -type l -lname \* \
   | xargs --no-run-if-empty ls -lL > /dev/null || true) 2>&1 | wc -l`
 
 ### printf "# badLinks: %s\n" "${badLinks}"
 
 if [ "${badLinks}" -gt 0 ]; then
   printf "ERROR: missing symlink targets:\n" 1>&2
   find "/hive/data/genomes/asmHubs/${dirPath}" -type l -lname \* \
     | xargs --no-run-if-empty ls -lL > /dev/null
   exit 255
 fi
 
 export DS=`date "+%F %T"`
 export destDir="/mirrordata/hubs/${dirPath}"
 printf "### sending %s\t%s\t##########\n" "`basename ${srcDir}`" "${DS}"
 printf "# srcDir: %s\n" "${srcDir}"
 printf "# destDir: %s\n" "${destDir}"
 
 ssh qateam@${downloadDest1} "mkdir -p ${destDir}" 2>&1 | grep -v "X11 forwarding request" || true &
 ssh qateam@${downloadDest2} "mkdir -p ${destDir}" 2>&1 | grep -v "X11 forwarding request" || true
 wait
 printf "# successful mkdir on ${downloadDest1} and ${downloadDest2}\n"
 
 ### 2021-12-20 - out of disk space on dynablat-01
 ### 2022-06-01 new dynamic-01 machine more disk space
 
 export dynaBlat="dynablat-01.soe.ucsc.edu"
 
 # export dynaBlat="128.114.119.136"
 
 ### check if there are actually index files to go:
 
 export idxCount=`ls ${srcDir}/*.gfidx 2> /dev/null | wc -l`
 
 if [ "${idxCount}" -gt 0 ]; then
 
 export dynaServerDir="/scratch/hubs/${dirPath}"
 
 ssh qateam@$dynaBlat "mkdir -p ${dynaServerDir}" 2>&1 | grep -v "X11 forwarding request" || true
 printf "# successful mkdir on $dynaBlat\n" 1>&2
 
 printf "rsync --stats -a -L -P ${srcDir}/${accession}.2bit \"qateam@$dynaBlat:${dynaServerDir}/\"\n" 1>&2
 rsync --stats -a -L -P ${srcDir}/${accession}.2bit "qateam@$dynaBlat:${dynaServerDir}/" \
   2>&1 | grep -v "X11 forwarding request"
 printf "rsync --stats -a -L -P ${srcDir}/*.gfidx \"qateam@$dynaBlat:${dynaServerDir}/\"\n" 1>&2
 rsync --stats -a -L -P ${srcDir}/*.gfidx "qateam@$dynaBlat:${dynaServerDir}/" \
   2>&1 | grep -v "X11 forwarding request"
 
 fi
 
 # the single file hub genome trackDb file:
 
 printf "rsync --delete --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest1}:${destDir}/\"\n" 1>&2
 printf "rsync --delete --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest2}:${destDir}/\"\n" 1>&2
 rsync --delete --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest1}:${destDir}/" \
   2>&1 | grep -v "X11 forwarding request" &
 rsync --delete --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest2}:${destDir}/" \
   2>&1 | grep -v "X11 forwarding request"
 wait
 
+### obsolete hub.txt files no longer sending out, became static 2024-10-23
 # the new single file hub genome trackDb file:
-printf "rsync --stats -a -L -P \"${srcDir}/download.hub.txt\" \"qateam@${downloadDest1}:${destDir}/hub.txt\"\n" 1>&2
-printf "rsync --stats -a -L -P \"${srcDir}/download.hub.txt\" \"qateam@${downloadDest2}:${destDir}/hub.txt\"\n" 1>&2
-rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@${downloadDest1}:${destDir}/hub.txt" \
-  2>&1 | grep -v "X11 forwarding request" &
-rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@${downloadDest2}:${destDir}/hub.txt" \
-  2>&1 | grep -v "X11 forwarding request"
-wait
+# printf "rsync --stats -a -L -P \"${srcDir}/download.hub.txt\" \"qateam@${downloadDest1}:${destDir}/hub.txt\"\n" 1>&2
+# printf "rsync --stats -a -L -P \"${srcDir}/download.hub.txt\" \"qateam@${downloadDest2}:${destDir}/hub.txt\"\n" 1>&2
+# rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@${downloadDest1}:${destDir}/hub.txt" \
+#   2>&1 | grep -v "X11 forwarding request" &
+# rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@${downloadDest2}:${destDir}/hub.txt" \
+#   2>&1 | grep -v "X11 forwarding request"
+# wait
 printf "# successful rsync\n"