9b06248769177714d1104ed0a8915e3641bd38cd
gperez2
  Wed Oct 9 15:00:21 2024 -0700
Adding and updating the CADD 1.7 track wrangled by Jeltje, refs #33940

diff --git src/hg/makeDb/trackDb/human/cadd.ra src/hg/makeDb/trackDb/human/cadd.ra
index b3cce4e..d22c60a 100644
--- src/hg/makeDb/trackDb/human/cadd.ra
+++ src/hg/makeDb/trackDb/human/cadd.ra
@@ -1,37 +1,37 @@
 track caddSuper
 shortLabel CADD
-longLabel CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions
+longLabel CADD Score for all single-basepair mutations and selected insertions/deletions
 superTrack on hide
 type bed
 visibility hide
 group phenDis
 color 100,130,160
 
     track cadd
-shortLabel CADD
+    shortLabel CADD 1.6
     longLabel CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores)
     type bigWig
     compositeTrack on
     parent caddSuper
-visibility dense
+    visibility hide
     #maxWindowToQuery 500000
     group phenDis
     color 100,130,160
     html caddSuper
     maxWindowToDraw 10000000
-mouseOverFunction noAverage
+    #mouseOverFunction noAverage
     
             track caddA
             shortLabel Mutation: A
             longLabel CADD 1.6 Score: Mutation is A
             type bigWig
             parent cadd on
             visibility dense
             bigDataUrl /gbdb/$D/cadd/a.bw
             maxHeightPixels 128:20:8
             viewLimits 10:50
             viewLimitsMax 0:100
     
             track caddC
             shortLabel Mutation: C
             longLabel CADD 1.6 Score: Mutation is C
@@ -57,44 +57,137 @@
             track caddT
             shortLabel Mutation: T
             longLabel CADD 1.6 Score: Mutation is T
             type bigWig
             parent cadd on
             visibility dense
             bigDataUrl /gbdb/$D/cadd/t.bw
             maxHeightPixels 128:20:8
             viewLimits 10:50
             viewLimitsMax 0:100
     
             track caddIns
             shortLabel Insertions
             longLabel CADD 1.6 Score: Insertions - label is length of insertion
             type bigBed 9 +
-parent caddSuper
+            parent cadd on
             visibility dense
             bigDataUrl /gbdb/$D/cadd/ins.bb
             mouseOver Mutation: $change CADD Phred score: $phred
             html caddSuper
             filter.score 10:100
             filterByRange.score on
             filterLabel.score Show only items with PHRED scale score of
             filterLimits.score 0:100
             #maxWindowCoverage 40000
             #maxItems 100000
             #maxWindowToDraw 9000000
             
             track caddDel
             shortLabel Deletions
             longLabel CADD 1.6 Score: Deletions - label is length of deletion
             type bigBed 9 +
-parent caddSuper
+            parent cadd on
             visibility dense
             bigDataUrl /gbdb/$D/cadd/del.bb
             mouseOver Mutation: $change CADD Phred score: $phred
             html caddSuper
             filter.score 10:100
             filterByRange.score on
             filterLabel.score Show only items with PHRED scale score of
             filterLimits.score 0:100
             #maxWindowCoverage 40000
             #maxItems 100000
             #maxWindowToDraw 9000000
+    
+    track cadd1_7
+    shortLabel CADD 1.7
+    longLabel CADD 1.7 Score for all possible single-basepair mutations (zoom in for scores)
+    type bigWig
+    compositeTrack on
+    parent caddSuper
+    visibility dense
+    #maxWindowToQuery 500000
+    group phenDis
+    color 100,130,160
+    html caddSuper1.7
+    maxWindowToDraw 10000000
+    #mouseOverFunction noAverage
+    
+            track cadd1_7_A
+            shortLabel Mutation: A
+            longLabel CADD 1.7 Score: Mutation is A
+            type bigWig
+            parent cadd1_7 on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd1.7/a.bw
+            maxHeightPixels 128:20:8
+            viewLimits 10:50
+            viewLimitsMax 0:100
+    
+            track cadd1_7_C
+            shortLabel Mutation: C
+            longLabel CADD 1.7 Score: Mutation is C
+            type bigWig
+            parent cadd1_7 on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd1.7/c.bw
+            maxHeightPixels 128:20:8
+            viewLimits 10:50
+            viewLimitsMax 0:100
+    
+            track cadd1_7_G
+            shortLabel Mutation: G
+            longLabel CADD 1.7 Score: Mutation is G
+            type bigWig
+            parent cadd1_7 on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd1.7/g.bw
+            maxHeightPixels 128:20:8
+            viewLimits 10:50
+            viewLimitsMax 0:100
+    
+            track cadd1_7_T
+            shortLabel Mutation: T
+            longLabel CADD 1.7 Score: Mutation is T
+            type bigWig
+            parent cadd1_7 on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd1.7/t.bw
+            maxHeightPixels 128:20:8
+            viewLimits 10:50
+            viewLimitsMax 0:100
+    
+            track cadd1_7_Ins
+            shortLabel Insertions
+            longLabel CADD 1.7 Score: Insertions - label is length of insertion
+            type bigBed 9 +
+            parent cadd1_7 on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd1.7/ins.bb
+            mouseOver Mutation: $change CADD Phred score: $phred
+            html caddSuper1.7
+            filter.score 10:100
+            filterByRange.score on
+            filterLabel.score Show only items with PHRED scale score of
+            filterLimits.score 0:100
+            #maxWindowCoverage 40000
+            #maxItems 100000
+            #maxWindowToDraw 9000000
+            
+            track cadd1_7_Del
+            shortLabel Deletions
+            longLabel CADD 1.7 Score: Deletions - label is length of deletion
+            type bigBed 9 +
+            parent cadd1_7 on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd1.7/del.bb
+            mouseOver Mutation: $change CADD Phred score: $phred
+            html caddSuper1.7
+            filter.score 10:100
+            filterByRange.score on
+            filterLabel.score Show only items with PHRED scale score of
+            filterLimits.score 0:100
+            #maxWindowCoverage 40000
+            #maxItems 100000
+            #maxWindowToDraw 9000000
+