a4646d25fdd147ff2982abcc104ea9cb89ff12e0
gperez2
  Thu Oct 10 10:41:22 2024 -0700
Making CADD 1.7 its own superTrack and changing the CADD superTrack name to 1.6. Originally had both in one superTrack but caused issues. Changed the caddSuper.html back to its previous 1.6 version and made a caddSuper1_7.html. Refs #33940

diff --git src/hg/makeDb/trackDb/human/cadd.ra src/hg/makeDb/trackDb/human/cadd.ra
index b3cce4e..5487942 100644
--- src/hg/makeDb/trackDb/human/cadd.ra
+++ src/hg/makeDb/trackDb/human/cadd.ra
@@ -1,26 +1,27 @@
 track caddSuper
-shortLabel CADD
+shortLabel CADD 1.6
 longLabel CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions
 superTrack on hide
 type bed
 visibility hide
 group phenDis
 color 100,130,160
+html caddSuper.html
 
 track cadd
-shortLabel CADD
+shortLabel CADD 1.6
 longLabel CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores)
 type bigWig
 compositeTrack on
 parent caddSuper
 visibility dense
 #maxWindowToQuery 500000
 group phenDis
 color 100,130,160
 html caddSuper
 maxWindowToDraw 10000000
 mouseOverFunction noAverage
 
         track caddA
         shortLabel Mutation: A
         longLabel CADD 1.6 Score: Mutation is A
@@ -54,47 +55,47 @@
         viewLimits 10:50
         viewLimitsMax 0:100
 
         track caddT
         shortLabel Mutation: T
         longLabel CADD 1.6 Score: Mutation is T
         type bigWig
         parent cadd on
         visibility dense
         bigDataUrl /gbdb/$D/cadd/t.bw
         maxHeightPixels 128:20:8
         viewLimits 10:50
         viewLimitsMax 0:100
 
 track caddIns
-shortLabel Insertions
+shortLabel CADD 1.6 Ins
 longLabel CADD 1.6 Score: Insertions - label is length of insertion
 type bigBed 9 +
 parent caddSuper
 visibility dense
 bigDataUrl /gbdb/$D/cadd/ins.bb
 mouseOver Mutation: $change CADD Phred score: $phred
 html caddSuper
 filter.score 10:100
 filterByRange.score on
 filterLabel.score Show only items with PHRED scale score of
 filterLimits.score 0:100
 #maxWindowCoverage 40000
 #maxItems 100000
 #maxWindowToDraw 9000000
 
 track caddDel
-shortLabel Deletions
+shortLabel CADD 1.6 Del
 longLabel CADD 1.6 Score: Deletions - label is length of deletion
 type bigBed 9 +
 parent caddSuper
 visibility dense
 bigDataUrl /gbdb/$D/cadd/del.bb
 mouseOver Mutation: $change CADD Phred score: $phred
 html caddSuper
 filter.score 10:100
 filterByRange.score on
 filterLabel.score Show only items with PHRED scale score of
 filterLimits.score 0:100
 #maxWindowCoverage 40000
 #maxItems 100000
 #maxWindowToDraw 9000000