7766e881ce9fa7ece509263fd71ecf8459e8c4ac
gperez2
  Wed Oct 9 16:12:57 2024 -0700
Adding release tag for the CADD 1.7 track, refs #33940

diff --git src/hg/makeDb/trackDb/human/cadd.alpha.ra src/hg/makeDb/trackDb/human/cadd.alpha.ra
new file mode 100644
index 0000000..d22c60a
--- /dev/null
+++ src/hg/makeDb/trackDb/human/cadd.alpha.ra
@@ -0,0 +1,193 @@
+track caddSuper
+shortLabel CADD
+longLabel CADD Score for all single-basepair mutations and selected insertions/deletions
+superTrack on hide
+type bed
+visibility hide
+group phenDis
+color 100,130,160
+
+    track cadd
+    shortLabel CADD 1.6
+    longLabel CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores)
+    type bigWig
+    compositeTrack on
+    parent caddSuper
+    visibility hide
+    #maxWindowToQuery 500000
+    group phenDis
+    color 100,130,160
+    html caddSuper
+    maxWindowToDraw 10000000
+    #mouseOverFunction noAverage
+    
+            track caddA
+            shortLabel Mutation: A
+            longLabel CADD 1.6 Score: Mutation is A
+            type bigWig
+            parent cadd on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd/a.bw
+            maxHeightPixels 128:20:8
+            viewLimits 10:50
+            viewLimitsMax 0:100
+    
+            track caddC
+            shortLabel Mutation: C
+            longLabel CADD 1.6 Score: Mutation is C
+            type bigWig
+            parent cadd on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd/c.bw
+            maxHeightPixels 128:20:8
+            viewLimits 10:50
+            viewLimitsMax 0:100
+    
+            track caddG
+            shortLabel Mutation: G
+            longLabel CADD 1.6 Score: Mutation is G
+            type bigWig
+            parent cadd on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd/g.bw
+            maxHeightPixels 128:20:8
+            viewLimits 10:50
+            viewLimitsMax 0:100
+    
+            track caddT
+            shortLabel Mutation: T
+            longLabel CADD 1.6 Score: Mutation is T
+            type bigWig
+            parent cadd on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd/t.bw
+            maxHeightPixels 128:20:8
+            viewLimits 10:50
+            viewLimitsMax 0:100
+    
+            track caddIns
+            shortLabel Insertions
+            longLabel CADD 1.6 Score: Insertions - label is length of insertion
+            type bigBed 9 +
+            parent cadd on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd/ins.bb
+            mouseOver Mutation: $change CADD Phred score: $phred
+            html caddSuper
+            filter.score 10:100
+            filterByRange.score on
+            filterLabel.score Show only items with PHRED scale score of
+            filterLimits.score 0:100
+            #maxWindowCoverage 40000
+            #maxItems 100000
+            #maxWindowToDraw 9000000
+            
+            track caddDel
+            shortLabel Deletions
+            longLabel CADD 1.6 Score: Deletions - label is length of deletion
+            type bigBed 9 +
+            parent cadd on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd/del.bb
+            mouseOver Mutation: $change CADD Phred score: $phred
+            html caddSuper
+            filter.score 10:100
+            filterByRange.score on
+            filterLabel.score Show only items with PHRED scale score of
+            filterLimits.score 0:100
+            #maxWindowCoverage 40000
+            #maxItems 100000
+            #maxWindowToDraw 9000000
+    
+    track cadd1_7
+    shortLabel CADD 1.7
+    longLabel CADD 1.7 Score for all possible single-basepair mutations (zoom in for scores)
+    type bigWig
+    compositeTrack on
+    parent caddSuper
+    visibility dense
+    #maxWindowToQuery 500000
+    group phenDis
+    color 100,130,160
+    html caddSuper1.7
+    maxWindowToDraw 10000000
+    #mouseOverFunction noAverage
+    
+            track cadd1_7_A
+            shortLabel Mutation: A
+            longLabel CADD 1.7 Score: Mutation is A
+            type bigWig
+            parent cadd1_7 on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd1.7/a.bw
+            maxHeightPixels 128:20:8
+            viewLimits 10:50
+            viewLimitsMax 0:100
+    
+            track cadd1_7_C
+            shortLabel Mutation: C
+            longLabel CADD 1.7 Score: Mutation is C
+            type bigWig
+            parent cadd1_7 on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd1.7/c.bw
+            maxHeightPixels 128:20:8
+            viewLimits 10:50
+            viewLimitsMax 0:100
+    
+            track cadd1_7_G
+            shortLabel Mutation: G
+            longLabel CADD 1.7 Score: Mutation is G
+            type bigWig
+            parent cadd1_7 on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd1.7/g.bw
+            maxHeightPixels 128:20:8
+            viewLimits 10:50
+            viewLimitsMax 0:100
+    
+            track cadd1_7_T
+            shortLabel Mutation: T
+            longLabel CADD 1.7 Score: Mutation is T
+            type bigWig
+            parent cadd1_7 on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd1.7/t.bw
+            maxHeightPixels 128:20:8
+            viewLimits 10:50
+            viewLimitsMax 0:100
+    
+            track cadd1_7_Ins
+            shortLabel Insertions
+            longLabel CADD 1.7 Score: Insertions - label is length of insertion
+            type bigBed 9 +
+            parent cadd1_7 on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd1.7/ins.bb
+            mouseOver Mutation: $change CADD Phred score: $phred
+            html caddSuper1.7
+            filter.score 10:100
+            filterByRange.score on
+            filterLabel.score Show only items with PHRED scale score of
+            filterLimits.score 0:100
+            #maxWindowCoverage 40000
+            #maxItems 100000
+            #maxWindowToDraw 9000000
+            
+            track cadd1_7_Del
+            shortLabel Deletions
+            longLabel CADD 1.7 Score: Deletions - label is length of deletion
+            type bigBed 9 +
+            parent cadd1_7 on
+            visibility dense
+            bigDataUrl /gbdb/$D/cadd1.7/del.bb
+            mouseOver Mutation: $change CADD Phred score: $phred
+            html caddSuper1.7
+            filter.score 10:100
+            filterByRange.score on
+            filterLabel.score Show only items with PHRED scale score of
+            filterLimits.score 0:100
+            #maxWindowCoverage 40000
+            #maxItems 100000
+            #maxWindowToDraw 9000000
+