68207fb5ba1960173ec5460bce40789997c80e19 hiram Wed Oct 9 16:11:26 2024 -0700 fixup some common names and allow only 10 tracks on a fungi refs #29545 diff --git src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh index 7ffb3e2..75ada48 100755 --- src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh +++ src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh @@ -12,46 +12,50 @@ # printf "usage: ./verifyOnDownload.sh \n" 1>&2 # ${toolsDir}/mkSendList.pl ${orderList} | while read F; do \ # ${toolsDir}/verifyOnDownload.sh $$F < /dev/null; done export host=$1 export orderList=$2 export successCount=0 export doneCount=0 export fileName=`basename $orderList` export subset=${fileName%.orderList.tsv} export minTrackCount=11 if [ "${subset}" == "invertebrate" ]; then minTrackCount=9 +elif [ "${subset}" == "brc" ]; then + minTrackCount=10 elif [ "${subset}" == "bacteria" ]; then minTrackCount=8 elif [ "${subset}" == "legacy" ]; then minTrackCount=9 elif [ "${subset}" == "plants" ]; then minTrackCount=10 elif [ "${subset}" == "birds" ]; then minTrackCount=11 elif [ "${subset}" == "fish" ]; then minTrackCount=11 elif [ "${subset}" == "mammals" ]; then minTrackCount=9 elif [ "${subset}" == "vertebrate" ]; then minTrackCount=11 elif [ "${subset}" == "archaea" ]; then minTrackCount=9 +elif [ "${subset}" == "fungi" ]; then + minTrackCount=10 elif [ "${subset}" == "viral" ]; then minTrackCount=7 fi # printf "# DBG subset '%s' min: %d\n" "${subset}" "${minTrackCount}" 1>&2 export dbHost="localhost" export hubSource="hgdownload-test.gi.ucsc.edu" if [ "${host}" = "apibeta.soe.ucsc.edu" ]; then hubSource="hgdownload.soe.ucsc.edu" fi export totalTrackCount=0 for dirPath in `~/kent/src/hg/makeDb/doc/asmHubs/mkSendList.pl "${orderList}"`