75bea92d3554ea57e4ace4af908b074c01832e63
lrnassar
  Wed Oct 9 13:42:03 2024 -0700
Adding UTF language var for the cronjob.

diff --git src/hg/utils/otto/clinGen/makeClinGenCspec.sh src/hg/utils/otto/clinGen/makeClinGenCspec.sh
index 9b75e44..0a06037 100755
--- src/hg/utils/otto/clinGen/makeClinGenCspec.sh
+++ src/hg/utils/otto/clinGen/makeClinGenCspec.sh
@@ -1,17 +1,20 @@
 #! /bin/bash
 
+export LANG=en_US.UTF-8
+export LC_ALL=en_US.UTF-8
+
 cd /hive/data/outside/otto/clinGen/clinGenCspec
 
 wget -q -O svis.json https://cspec.genome.network/cspec/api/svis
 wget -q http://purl.obolibrary.org/obo/mondo.json
 wget -q -O geneToDisease.csv https://search.clinicalgenome.org/kb/gene-validity/download
 bigBedToBed /gbdb/hg38/hgnc/hgnc.bb hgnc.bed
 
 oldCountHg38=$(bigBedInfo clinGenCspecHg38.bb | grep -i "itemCount")
 oldCountHg19=$(bigBedInfo clinGenCspecHg19.bb | grep -i "itemCount")
 
 python3 - << END | sort -k1,1 -k2,2n > cspec.bed
 import json
 import re
 import sys