Commits for hiram

v473_preview to v473_preview2 (2024-10-14 to 2024-10-21) v473

12f2fefa030bbb210b64e64d460f1c95bfde0905 Thu Oct 17 13:52:24 2024 -0700

• need to sanitize the the db for the pop-up display when it is a hub
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text

f36dcb0edd6e74a310b47ec28cb495fa156ff6a5 Thu Oct 17 13:54:05 2024 -0700

• adding a couple per user request refs #29545
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 1, context: html, text, full: html, text

575fd05526889a61d457a5a31f96c86de0d637c8 Fri Oct 18 13:19:55 2024 -0700

• adding a tmpDir function to properly choose a temporary directory no redmine
  • src/hg/utils/automation/HgAutomate.pm - lines changed 35, context: html, text, full: html, text

4165c71e12cef21e41d7042b9f8f1ba71d9cd910 Fri Oct 18 13:29:11 2024 -0700

• eliminate direct use of /scratch/tmp and instead use appropriate tmpDir function no redmine
  • src/hg/utils/automation/doRepeatMasker.pl - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/automation/doSimpleRepeat.pl - lines changed 5, context: html, text, full: html, text
  • src/hg/utils/automation/doWindowMasker.pl - lines changed 4, context: html, text, full: html, text

6ed25cfed02721ee6b38518c73096800f0340b40 Fri Oct 18 13:37:51 2024 -0700

• eliminate direct use of /scratch/tmp and instead use appropriate tmpDir function no redmine
  • src/hg/utils/automation/doSameSpeciesLiftOver.pl - lines changed 1, context: html, text, full: html, text