62342829fc47bb67d49f3118226fe663bf2e9af4 markd Thu Oct 17 23:04:35 2024 -0700 import of GENCODE V47 final release diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt index 7bfdc62..fe57de3 100644 --- src/hg/makeDb/doc/hg38/gencode.txt +++ src/hg/makeDb/doc/hg38/gencode.txt @@ -1378,43 +1378,43 @@ # Update 'Release Notes' (for final, not pre) # human/hg38/wgEncodeGencodeSuper.html jkmake DBS=hg38 # check joiner pushd /hive/data/genomes/hg38/bed/gencodeV46/hgcImport${pre} make -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck # check tracks in browser sandbox # commit all jkmake DBS=hg38 alpha ######################################################################### 2024-07-31: import of UCSC GENCODE group processing of GENCODE V47 pre-release for GENCODE Versions (markd) - +2024-10-17: release of GENCODE V47 # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release type and versions # pre-release shell variables ver=47 ensver=113 pre="Pre" ensdate='Sept 2024 pre-release' # release shell variables ver=47 ensver=113 pre="" - ensdate='Sept 2024' + ensdate='Oct 2024' # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions # download, build and load tables mkdir -p /hive/data/genomes/hg38/bed/gencodeV${ver}/hgcImport${pre} pushd /hive/data/genomes/hg38/bed/gencodeV${ver}/hgcImport${pre} (time nice make -O -j 32 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out& # compare tables from previous release to see if number changed makes # sense. Results are in gencode-cmp.tsv # generate trackDb and joiner blurb pushd ~/kent/src/hg/makeDb/trackDb