5f313d07411a062ed7d4995781c7c1f464015ad3
markd
  Thu Oct 17 23:35:14 2024 -0700
import of GENCODE VM36

diff --git src/hg/makeDb/doc/mm39/gencode.txt src/hg/makeDb/doc/mm39/gencode.txt
index d06aa2f..7ca8b4e 100644
--- src/hg/makeDb/doc/mm39/gencode.txt
+++ src/hg/makeDb/doc/mm39/gencode.txt
@@ -478,42 +478,43 @@
     # mouse/mm39/wgEncodeGencodeSuper.html
 
     jkmake DBS=mm39
 
     # edit all.joiner to add ~/tmp/gencodeVM35/hgcImport${pre}.joiner
     # already added for pre-release
     # verify with:
     pushd /hive/data/genomes/mm39/bed/gencodeVM35/hgcImport${pre}
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # check tracks in browser sandbox
     # commit all
     jkmake DBS=mm39 alpha
 ##############################################################################
 2024-07-31: import of UCSC GENCODE group processing of GENCODE VM36 pre-release for GENCODE Versions (markd)
+2024-10-17: import of final release
 
    # set shell variable:
    # pre-release shell variables 
        ver=M36
        ensver=113
        pre="Pre"
        ensdate='Sept 2024 pre-release' 
    # release shell variables 
        ver=M36
        ensver=113
        pre=""
-       ensdate='Sept 2024' 
+       ensdate='Oct 2024'
 
     # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions
 
     # download, build and load tables
     mkdir -p /hive/data/genomes/mm39/bed/gencodeV${ver}/hgcImport${pre}
     pushd /hive/data/genomes/mm39/bed/gencodeV${ver}/hgcImport${pre}
 
     (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
 
     # compare tables from previous release to see if number changed makes
     # sense.  Results are in gencode-cmp.tsv
 
     # generate trackDb and joiner blurb
     pushd ~/kent/src/hg/makeDb/trackDb
     ../../makeDb/outside/gencode/bin/gencodeGenerateTrackDbs mm39 ${ver} ${ensver} "${ensdate}"