8c2f7318d8d821de9b2a25750586a94ab5e8c1bb lrnassar Fri Nov 15 18:50:19 2024 -0800 Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM. diff --git src/hg/makeDb/trackDb/blatHg16.html src/hg/makeDb/trackDb/blatHg16.html index 6558b09..0f78f99 100644 --- src/hg/makeDb/trackDb/blatHg16.html +++ src/hg/makeDb/trackDb/blatHg16.html @@ -1,26 +1,26 @@ <H2>Description</H2> <P> This track displays alignments of the $o_date $o_organism genome vs. the $organism genome.</P> <H2>Methods</H2> <P> The alignments were made with blat in translated protein mode using the parameters <em>-q=dnax</em> <em>-t=dnax</em>. The default settings were used otherwise. Both genomes were masked with -<A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A> and +<A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A> and Tandem Repeat Finder before running blat.</P> <H2>Credits</H2> <P> This track was generated at UCSC. <H2>References</H2> <p> Kent WJ. <a href="https://genome.cshlp.org/content/12/4/656.abstract" target="_blank"> BLAT--the BLAST-like alignment tool</a>. <em>Genome Res</em>. 2002 Apr;12(4):656-64. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/11932250" target="_blank">11932250</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC187518/" target="_blank">PMC187518</a> </p>