8c2f7318d8d821de9b2a25750586a94ab5e8c1bb lrnassar Fri Nov 15 18:50:19 2024 -0800 Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM. diff --git src/hg/makeDb/trackDb/drosophila/chainDroVir2.html src/hg/makeDb/trackDb/drosophila/chainDroVir2.html index 4485d9a..6eb82db 100644 --- src/hg/makeDb/trackDb/drosophila/chainDroVir2.html +++ src/hg/makeDb/trackDb/drosophila/chainDroVir2.html @@ -44,31 +44,31 @@ alignments between a single $o_organism chromosome and a single $organism chromosome into a group and creates a kd-tree out of the gapless subsections (blocks) of the alignments. A dynamic program was then run over the kd-trees to find the maximally scoring chains of these blocks. Chains scoring below a threshold were discarded; the remaining chains are displayed in this track.</P> <H2>Credits</H2> <P> Blastz was developed at <A HREF="http://www.bx.psu.edu/miller_lab" TARGET=_blank>Pennsylvania State University</A> by Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from Ross Hardison.</P> <P> Lineage-specific repeats were identified by Arian Smit and his -<A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A> +<A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A> program.</P> <P> The axtChain program was developed at the University of California at Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler. </P> <P> The browser display and database storage of the chains were generated by Robert Baertsch and Jim Kent.</P> <H2>References</H2> <P> Chiaromonte, F., Yap, V.B., Miller, W. <A HREF="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=11928468&dopt=Abstract" TARGET=_blank>Scoring pairwise genomic sequence alignments</A>. <em>Pac Symp Biocomput 2002</em>, 115-26 (2002).</P>