8c2f7318d8d821de9b2a25750586a94ab5e8c1bb
lrnassar
  Fri Nov 15 18:50:19 2024 -0800
Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM.

diff --git src/hg/makeDb/trackDb/human/denisovaModernHumans.html src/hg/makeDb/trackDb/human/denisovaModernHumans.html
index ad3896b..6cd0369 100644
--- src/hg/makeDb/trackDb/human/denisovaModernHumans.html
+++ src/hg/makeDb/trackDb/human/denisovaModernHumans.html
@@ -4,31 +4,31 @@
 The Modern Human Seq track shows human sequence reads of seven individuals mapped 
 to the human genome. The purpose of this track is to put the divergence of the 
 Denisova genome into perspective with regard to present-day humans.
 </P>
 
 <H2>Methods</H2>
 <P>
 DNA was obtained for each of seven individuals from the CEPH-Human
 Genome Diversity Panel (HGDP): HGDP00456 (Mbuti), HGDP00998 (Karitiana
 Native American), HGDP00665 (Sardinia), HGDP00491 (Bougainville
 Melanesian), HGDP00711 (Cambodian), HGDP01224 (Mongolian) and
 HGDP00551 (Papuan). Each library was sequenced on the Illumina Genome
 Analyzer IIx using 2x101 + 7 cycles on one flow cell according to the
 manufacturer's instructions for multiplex sequencing. The paired-end
 reads were aligned
-using the <A HREF="http://bio-bwa.sourceforge.net/"
+using the <A HREF="https://bio-bwa.sourceforge.net/"
 TARGET=_blank>Burrows-Wheeler Aligner</A> to the human sequence (NCBI36/hg18)
 </P>
 <P>
 <A HREF="ftp://hgdownload.soe.ucsc.edu/gbdb/hg18/denisova/modernHumanSeq/">Download</A> the 
 Modern Human Seq track data sets from the Genome Browser downloads server.
 </P>
 
 <H2>References</H2>
 <P>
 Briggs A.W., Stenzel U., Meyer M., Krause J., Kircher M., P&#228;&#228;bo S. 
 <A HREF="https://academic.oup.com/nar/article/38/6/e87/3112544"
 TARGET=_blank> Removal of deaminated cytosines and detection of in vivo
 methylation in ancient DNA</A>.
 <EM>Nucleic Acids Res.</EM> 2009 Dec 22:38(6) e87.
 </P>