8c2f7318d8d821de9b2a25750586a94ab5e8c1bb
lrnassar
  Fri Nov 15 18:50:19 2024 -0800
Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM.

diff --git src/hg/makeDb/trackDb/human/encodePseudogene.html src/hg/makeDb/trackDb/human/encodePseudogene.html
index 4b4c811..4fbf941 100644
--- src/hg/makeDb/trackDb/human/encodePseudogene.html
+++ src/hg/makeDb/trackDb/human/encodePseudogene.html
@@ -84,31 +84,31 @@
 All pseudogenes in the list have been extensively curated by Adam Frankish and
 Jennifer Harrow at the The Wellcome Trust Sanger Institute.</P>
 
 <H3>References</H3>
 <P>
 More information about this data set is available from <A
 HREF=http://www.pseudogene.org/ENCODE/ TARGET=_blank>pseudogene.org/ENCODE</A>.
 </P>
 <P></P>
 <HR>
 
 <H2>Havana-Gencode Annotated Pseudogenes and Immunglobulin Segments</H2>
 <H3>Description</H3>
 <P>
 This track shows pseudogenes annotated by the 
-<A HREF=http://www.sanger.ac.uk/HGP/havana/ TARGET=_blank>HAVANA</A> group 
+<A HREF=https://www.sanger.ac.uk/HGP/havana/ TARGET=_blank>HAVANA</A> group 
 at the Wellcome Trust Sanger Institute.  Pseudogenes have homology to protein
 sequences but generally have a disrupted CDS.  For all annotated
 pseudogenes, an active homologous gene (the parent) can be identified
 elsewhere in the genome.  Pseudogenes are classified as processed or
 unprocessed.
 
 <H3>Methods</H3>
 <P>
 Prior to manual annotation, finished sequence is submitted to an
 automated analysis pipeline for similarity searches and ab initio gene
 predictions.  The searches are run on a computer farm and stored in an
 Ensembl MySQL database using the Ensembl analysis pipeline system
 (Searle <em>et al.</em>, 2004, Harrow <em>et al.</em>, 2006).</P>
 <P>
 A pseudogene is annotated