8c2f7318d8d821de9b2a25750586a94ab5e8c1bb lrnassar Fri Nov 15 18:50:19 2024 -0800 Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM. diff --git src/hg/makeDb/trackDb/human/encodeUncFaire.html src/hg/makeDb/trackDb/human/encodeUncFaire.html index aa13892..482520a 100644 --- src/hg/makeDb/trackDb/human/encodeUncFaire.html +++ src/hg/makeDb/trackDb/human/encodeUncFaire.html @@ -54,31 +54,31 @@ consistent with enrichment for nucleosome-depleted regions of the genome. Therefore, the method may have utility as a positive selection for genomic regions with properties normally detected by assays like DNAse hypersensitivity.

Verification

The data were verified using PCR with primers designed to promoters enriched with FAIRE and downstream coding regions.

Credits

Cell culture, fixing, and DNA amplification were performed by Jonghwan Kim in the Vishy Iyer lab at the University of Texas, Austin. FAIRE was done by Paul Giresi in -the Jason Lieb lab at the University of North Carolina at Chapel Hill. Paul Giresi of NimbleGen did the sample labeling and hybridization with the help of Mike Singer and Roland Green. Nan Jiang at NimbleGen supplied the Software used for the permutation analysis.

References

Buck, M.J., Nobel, A.B., and Lieb, J.D. ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data. Genome Biol. 6(11), R97 (2005).

Nagy, P.L., Cleary, M.L., Brown, P.O., and Lieb, J.L.