8c2f7318d8d821de9b2a25750586a94ab5e8c1bb lrnassar Fri Nov 15 18:50:19 2024 -0800 Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM. diff --git src/hg/makeDb/trackDb/human/encodeUncFaire.html src/hg/makeDb/trackDb/human/encodeUncFaire.html index aa13892..482520a 100644 --- src/hg/makeDb/trackDb/human/encodeUncFaire.html +++ src/hg/makeDb/trackDb/human/encodeUncFaire.html @@ -54,31 +54,31 @@ consistent with enrichment for nucleosome-depleted regions of the genome. Therefore, the method may have utility as a positive selection for genomic regions with properties normally detected by assays like DNAse hypersensitivity. </P> <H2>Verification</H2> <P> The data were verified using PCR with primers designed to promoters enriched with FAIRE and downstream coding regions. </P> <H2>Credits</H2> <P> Cell culture, fixing, and DNA amplification were performed by Jonghwan Kim in the <A HREF="http://microarray.icmb.utexas.edu/" TARGET=_blank>Vishy Iyer lab</A> at the University of Texas, Austin. FAIRE was done by Paul Giresi in -the <A HREF="http://www.bio.unc.edu/faculty/lieb/labpages/default.shtml" +the <A HREF="https://bio.unc.edu/faculty/lieb/labpages/default.shtml" TARGET=_blank>Jason Lieb lab</A> at the University of North Carolina at Chapel Hill. Paul Giresi of <A HREF="https://sequencing.roche.com/en/products-solutions/by-category/target-enrichment/hybridization.html" TARGET=_blank>NimbleGen</A> did the sample labeling and hybridization with the help of Mike Singer and Roland Green. Nan Jiang at NimbleGen supplied the Software used for the permutation analysis.</P> <H2>References</H2> <P> Buck, M.J., Nobel, A.B., and Lieb, J.D. <A HREF="https://genomebiology.biomedcentral.com/articles/10.1186/gb-2005-6-11-r97" TARGET=_blank>ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data</A>. <em>Genome Biol.</em> <B>6</B>(11), R97 (2005).</P> <P> Nagy, P.L., Cleary, M.L., Brown, P.O., and Lieb, J.L. <A HREF="https://www.pnas.org/content/100/11/6364.full"