8c2f7318d8d821de9b2a25750586a94ab5e8c1bb lrnassar Fri Nov 15 18:50:19 2024 -0800 Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM. diff --git src/hg/makeDb/trackDb/human/evofold.html src/hg/makeDb/trackDb/human/evofold.html index 82821f5..f6d9245 100644 --- src/hg/makeDb/trackDb/human/evofold.html +++ src/hg/makeDb/trackDb/human/evofold.html @@ -50,31 +50,31 @@ were originally computed on the hg17 (May 2004) human assembly, from which the hg16 (July 2003), hg18 (May 2006), and hg19 (Feb 2009) predictions were lifted. As a result, the multiple alignments shown on the track details pages may differ from the 8-way alignments used for their prediction. Additionally, some weak predictions have been eliminated from the set displayed on hg18 and hg19. The hg17 prediction set corresponds exactly to the set analyzed in the EvoFold paper referenced below. </P> <H2>Credits</H2> <P> The EvoFold program and browser track were developed by <A HREF= "MAILTO:jsp@soe.ucsc.edu">Jakob Skou Pedersen</A> of the UCSC Genome Bioinformatics Group, now at Aarhus University, Denmark.</P> -<P>The RNA secondary structure is rendered using the <A HREF="http://varna.lri.fr/" +<P>The RNA secondary structure is rendered using the <A HREF="https://varna.lisn.upsaclay.fr/" TARGET = _BLANK>VARNA Java applet</A>. <H2>References</H2> <H3>EvoFold</H3> <p> Pedersen JS, Bejerano G, Siepel A, Rosenbloom K, Lindblad-Toh K, Lander ES, Kent J, Miller W, Haussler D. <a href="https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.0020033" target="_blank"> Identification and classification of conserved RNA secondary structures in the human genome</a>. <em>PLoS Comput Biol</em>. 2006 Apr;2(4):e33. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/16628248" target="_blank">16628248</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1440920/" target="_blank">PMC1440920</a> </p>