8c2f7318d8d821de9b2a25750586a94ab5e8c1bb
lrnassar
  Fri Nov 15 18:50:19 2024 -0800
Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM.

diff --git src/hg/makeDb/trackDb/sibTxGraph.html src/hg/makeDb/trackDb/sibTxGraph.html
index 37b6fdc..c2b1dd4 100644
--- src/hg/makeDb/trackDb/sibTxGraph.html
+++ src/hg/makeDb/trackDb/sibTxGraph.html
@@ -3,31 +3,31 @@
 This track shows the graphs constructed by analyzing experimental RNA
 transcripts and serves as basis for the predicted alternative splicing
 transcripts shown in the SIB Genes track.  The blocks represent exons; lines
 indicate introns. The graphical display is drawn such that no exons
 overlap, making alternative events easier to view when the track is in full
 display mode and the resolution is set to approximately gene-level.  </P>
 <P>Further information on the graphs can be found on the
 <A HREF="https://ccg.vital-it.ch/tromer/" TARGET="_BLANK">Transcriptome 
 Web interface</A>.</P>
 
 <H2>Methods</H2>
 <P>
 The splicing graphs were generated using a multi-step pipeline:  
 <OL>
 <LI>RefSeq and GenBank RNAs and ESTs are aligned to the genome with
-<A HREF="http://sibsim4.sourceforge.net" TARGET="_BLANK">SIBsim4</A>, keeping 
+<A HREF="https://sibsim4.sourceforge.net/" TARGET="_BLANK">SIBsim4</A>, keeping 
 only the best alignments for each RNA.
 <LI>Alignments are broken up at non-intronic gaps, with small isolated 
 fragments thrown out.
 <LI>A splicing graph is created for each set of overlapping alignments.  This
 graph has an edge for each exon or intron, and a vertex for each splice site,
 start, and end.  Each RNA that contributes to an edge is kept as evidence for
 that edge.
 <LI>Graphs consisting solely of unspliced ESTs are discarded.
 </OL></P>
 
 <H2>Credits</H2>
 <P>
 The SIB Alternative Splicing Graphs track was produced on the <A
 HREF="https://www.vital-it.ch/" TARGET="_BLANK">Vital-IT</A> high-performance 
 computing platform