8c2f7318d8d821de9b2a25750586a94ab5e8c1bb lrnassar Fri Nov 15 18:50:19 2024 -0800 Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM. diff --git src/hg/makeDb/trackDb/zebrafish/vegaGeneZfish.html src/hg/makeDb/trackDb/zebrafish/vegaGeneZfish.html index ba9150d..bfd8ab4 100644 --- src/hg/makeDb/trackDb/zebrafish/vegaGeneZfish.html +++ src/hg/makeDb/trackDb/zebrafish/vegaGeneZfish.html @@ -26,31 +26,31 @@ TARGET=_BLANK>project. This is based on the tiling path information from the FPC database.

Display Conventions and Configuration

This track follows the display conventions for gene prediction tracks using the following color scheme to indicate the status of the gene annotation:

Known (Dark blue): genes that are identical to known zebrafish complementary DNA or protein sequences and have an entry in the species-specific model organism database, -ZFIN. +ZFIN.
Novel (Dark blue): genes that have an open reading frame (ORF) and are identical or homologous to zebrafish cDNAs, zebrafish ESTs, or proteins in all species. Novel transcripts are genes that fit the criteria of novel genes with the exception that an unambiguous ORF cannot be assigned.
Putative (Medium blue): genes whose sequences are identical or homologous to zebrafish ESTs but do not contain an ORF.
Predicted (Light blue): genes based on ab initio prediction and for which at least one exon is supported by biological data (unspliced ESTs, protein sequence similarity with mouse or tetraodon genomes, or expression data from Rosetta).
Unclassified (Gray).

The details pages show only the Vega gene type and not the transcript type. @@ -63,18 +63,18 @@ here.

Credits

Thanks to Kerstin Howe, Mario Caccamo and Ian Sealy at the Wellcome Trust Sanger Institute for providing the GFF files and additional annotations for the Vega genes. Vega gene annotations are generated by manual annotation by the Zebrafish sequence analysis group and the HAVANA -group at the Sanger Institute and ZFIN.