8c2f7318d8d821de9b2a25750586a94ab5e8c1bb
lrnassar
  Fri Nov 15 18:50:19 2024 -0800
Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM.

diff --git src/hg/makeDb/trackDb/affyExonTissues.html src/hg/makeDb/trackDb/affyExonTissues.html
index 33efa8c..ae7ef49 100644
--- src/hg/makeDb/trackDb/affyExonTissues.html
+++ src/hg/makeDb/trackDb/affyExonTissues.html
@@ -1,43 +1,43 @@
 <H2>Methods</H2>
 <P>
 RNA (from a commercial source) from 11 tissues were hybridized to Affymetrix 
 $Organism Exon 1.0 ST arrays. For each tissue, 3 replicate experiments were 
 performed 
 for a total of 33 arrays.  The raw intensity signal from the arrays
 was normalized
 with a quantile normalization method, then run through the PLIER algorithm.
 The normalized data were then converted to median-centered log-ratios, 
 which are displayed as green for negative log-ratios (below-median expression),
 and red for positive (above-median expression).</P>
 
 <P>The probe sets for this microarray track are shown in the 
 the <B>Affy Exon Probes</B> track.</P>
 
 <H2>Credits</H2>
 <P>
 This track was produced by Andy Pohl, Kayla Smith, and Pauline Fujita of the 
 genome browser group at UCSC, Melissa Cline of the 
 <A HREF="http://ribonode.ucsc.edu/" TARGET=_blank>Ares lab</A> at UCSC, and 
 Chuck Sugnet at <A HREF="https://www.thermofisher.com/us/en/home/life-science/microarray-analysis.html" TARGET=_blank>Affymetrix</A>, based on 
 <A HREF="https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-data-analysis/microarray-analysis-sample-data/exon-st-array-sample-data-set.html" target="_blank">
 sample exon array data</A> available from Affymetrix, produced by Tyson Clark. 
 </P>
 
 <H2>References</H2>
 <p>
 Pohl AA, Sugnet CW, Clark TA, Smith K, Fujita PA, Cline MS.
 <a href="https://academic.oup.com/bioinformatics/article/25/18/2442/197035" target="_blank">
 Affy exon tissues: exon levels in normal tissues in human, mouse and rat</a>.
 <em>Bioinformatics</em>. 2009 Sep 15;25(18):2442-3.
 PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/19570805" target="_blank">19570805</a>; PMC: <a
 href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2735668/" target="_blank">PMC2735668</a>
 </p>
 
 <H2>Links</H2>
 <P><UL><LI>
 <A HREF="https://www.thermofisher.com/order/catalog/product/901168"
 target="_blank">Affymetrix $Organism Exon 1.0 ST array web page</A></LI>
 <LI><A HREF="https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-data-analysis/microarray-analysis-sample-data/exon-st-array-sample-data-set.html" target="_blank"
 >Affymetrix $Organism Exon data</A></LI>
-<LI><A HREF="http://tools.thermofisher.com/content/sfs/brochures/plier_technote.pdf" target="_blank"
+<LI><A HREF="https://assets.thermofisher.com/TFS-Assets/LSG/brochures/plier_technote.pdf" target="_blank"
 >PLIER algorithm documentation (PDF).</A></LI></UL></P>