8c2f7318d8d821de9b2a25750586a94ab5e8c1bb
lrnassar
  Fri Nov 15 18:50:19 2024 -0800
Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM.

diff --git src/hg/makeDb/trackDb/blatMouse.html src/hg/makeDb/trackDb/blatMouse.html
index 3b14ea9..38a395d 100644
--- src/hg/makeDb/trackDb/blatMouse.html
+++ src/hg/makeDb/trackDb/blatMouse.html
@@ -1,29 +1,29 @@
 <H2>Description</H2>
 <P>
 This track displays alignments of 16 million mouse whole genome shotgun 
 reads (3x coverage) vs. the draft human genome.</P>
 
 <H2>Method</H2>
 <P>
 The alignments were made with blat in translated protein mode requiring 
 a match of seven out of eight amino acids in a row to trigger a detailed 
 alignment.  The human genome was masked with 
-<A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A> and 
+<A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A> and 
 <A HREF="http://tandem.biomath.mssm.edu/trf/trf.html" TARGET=_blank>Tandem 
 Repeats Finder</A> before running blat. Regions with more than 400 read 
 alignments were filtered out. Beware of alignments of greater than 97% 
 identity:  these may reflect mouse contamination of the human assembly or 
 human contamination of the mouse shotgun data.</P>
 
 <H2>Credits</H2>
 <P>
 This track was produced at UCSC. Mouse sequence data were provided by the 
 Mouse Genome Sequencing Consortium. 
 
 <H2>References</H2> 
 <P>
 Kent, W.J.
 <A HREF="http://www.genome.org/cgi/content/abstract/12/4/656" 
 TARGET=_blank>BLAT - the BLAST-like alignment tool</A>.
 <em>Genome Res.</em> <B>12</B>(4), 656-664 (2002).</P>