8c2f7318d8d821de9b2a25750586a94ab5e8c1bb
lrnassar
  Fri Nov 15 18:50:19 2024 -0800
Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM.

diff --git src/hg/makeDb/trackDb/blatMus.html src/hg/makeDb/trackDb/blatMus.html
index 49f8ee3..86ddbd0 100644
--- src/hg/makeDb/trackDb/blatMus.html
+++ src/hg/makeDb/trackDb/blatMus.html
@@ -1,30 +1,30 @@
 <H2>Description</H2>
 <P>
 This track displays alignments of the mouse genome vs.
 the human genome.</P>
 
 <H2>Methods</H2>
 <P>
 The alignments were made with blat in translated protein mode
 using the parameters -q=dnax -t=dnax. Otherwise, the default
 settings were used. Both genomes were masked with 
-<A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A> 
+<A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A> 
 and <A HREF="http://tandem.biomath.mssm.edu/trf/trf.html" TARGET=_blank>Tandem
 Repeats Finder</A> before running blat. Positions with more than 250 
 alignments were filtered out.  Beware of alignments of greater than 
 97% identity: these may reflect mouse contamination in the human genome or
 human contamination in the mouse genome.</P>
 
 <H2>Credits</H2>
 <P>
 This track was produced at UCSC. Mouse sequence data were provided by the 
 Mouse Genome Sequencing Consortium. </P>
 
 <H2>References</H2>
 <P>
 Kent, W.J.
 <A HREF="http://www.genome.org/cgi/content/abstract/12/4/656"
 TARGET=_blank>BLAT - the BLAST-like alignment tool</A>.
 <em>Genome Res.</em> <B>12</B>(4), 656-664 (2002).</P>