8c2f7318d8d821de9b2a25750586a94ab5e8c1bb
lrnassar
  Fri Nov 15 18:50:19 2024 -0800
Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM.

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 <H2>Overview</H2>
 <P>
 This super-track combines related tracks from Yale Transcript Map analysis.
 These tracks contain transcriptome data from different
 cell lines and biological samples as well as analysis of transcriptionally
 active regions (TARs).
 </P>
 Experiments were performed with Yale MAS (Maskless Array Synthesizer)
 ENCODE oligonucleotide microarray (see NCBI
 <A HREF="https://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GPL2105"
 TARGET=_blank>GEO GPL2105</A> for details of this array design) as well as
 the Affymetrix ENCODE oligonucleotide microarray. Multiple biological samples 
 were assayed, such as total RNA from human NB4 cells. Experiments also included 
 chemical treatments such as retinoic acid (RA) treatments.
 
 <H2>Credits</H2>
 <H3>Yale MAS RNA, Yale MAS TAR</H3>
 <P>
 These data were generated and analyzed by the the labs of Michael Snyder,
 Mark Gerstein and Sherman Weissman at Yale University.</P>
 
 <H3>Yale RNA, Yale TAR</H3>
 <P>
 These data were generated and analyzed by the Yale/Affymetrix
 collaboration among the labs of Michael Snyder, Mark Gerstein and
 Sherman Weissman at Yale University and Tom Gingeras at Affymetrix.</P>
 
 <H3>Yale RACE</H3>
 <P>
 These data were generated and analyzed by the lab of Mark Gerstein 
 at Yale University.</P>
 
 <H2>References</H2>
 <P>
 Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X,
 Rinn JL, Tongprasit W, Samanta M <em>et al</em>.
 <A HREF="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15539566&query_hl=7"
 TARGET=_blank>Global identification of human transcribed sequences with
 genome tiling arrays</A>.
 <em>Science</em>. 2004 Dec 24;306(5705):2242-6.</P>
 <P>
 Cheng J, Kapranov P, Drenkow J, Dike S, Brubaker S, Patel S,
 Long J, Stern D, Tammana H <em>et al</em>.
 <A HREF="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15790807&query_hl=5"
 TARGET=_blank>Transcriptional maps of 10 human chromosomes at 5-nucleotide
 resolution</A>.
 <em>Science</em>. 2005 May 20;308(5725):1149-54.</P>
 <P>
 Kapranov P, Cawley SE, Drenkow J, Bekiranov S, Strausberg RL,
 Fodor SP, Gingeras TR.
 <A HREF="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11988577&query_hl=5"
 TARGET=_blank>Large-scale transcriptional activity in chromosomes 21 and 22</A>.
 <em>Science</em>. 2002 May 3;296(5569):916-9.</P>
 <P>
 Kluger Y, Tuck DP, Chang JT, Nakayama Y, Poddar R, Kohya N,
 Lian Z, Ben Nasr A, Halaban HR <em>et al</em>.
 <A HREF="https://www.pnas.org/content/101/17/6508.full"
 TARGET=_blank>Lineage specificity of gene expression patterns</A>.
 <em>Proc Natl Acad Sci U S A</em>. 2004 Apr 27;101(17):6508-13. </P>
 <P>
 Rinn JL, Euskirchen G, Bertone P, Martone R, Luscombe NM,
 Hartman S, Harrison PM, Nelson FK, Miller P <em>et al.</em>
-<A HREF="http://genesdev.cshlp.org/content/17/4/529.full"
+<A HREF="https://genesdev.cshlp.org/content/17/4/529.full"
 TARGET=_blank>The transcriptional activity of human Chromosome 22</A>.
 <em>Genes Dev</em>. 2003 Feb 15;17(4):529-40. </P>