8c2f7318d8d821de9b2a25750586a94ab5e8c1bb
lrnassar
  Fri Nov 15 18:50:19 2024 -0800
Giving the UI link cronjob some love by fixing all the 301 redirects. These are the bulk of the items listed on the cron. No RM.

diff --git src/hg/makeDb/trackDb/zebrafish/mgcGenes.html src/hg/makeDb/trackDb/zebrafish/mgcGenes.html
index 7539d75..fe32252 100644
--- src/hg/makeDb/trackDb/zebrafish/mgcGenes.html
+++ src/hg/makeDb/trackDb/zebrafish/mgcGenes.html
@@ -1,52 +1,52 @@
 <H2>Description</H2>
 <P>
 This track shows alignments of $organism mRNAs from the
 <A HREF="http://zgc.nci.nih.gov/" TARGET=_blank>Zebrafish Gene Collection</A> 
 (ZGC) having full-length open reading frames (ORFs) to the genome. This is a 
 subproject of the Mammalian Gene Collection (MGC) project. </P> 
 
 <H2>Display Conventions and Configuration</H2>
 <P>
 The track follows the display conventions for 
 <A HREF="../goldenPath/help/hgTracksHelp.html#GeneDisplay">gene prediction 
 tracks</A>.  </P>
 <P>
 An optional codon coloring feature is available for quick
 validation and comparison of gene predictions.
 To display codon colors, select the <em>genomic codons</em> option from the
 <em>Color track by codons</em> pull-down menu. Click 
 <A HREF="../goldenPath/help/hgCodonColoring.html">here</A> for more 
 information about this feature. </P>
 
 <H2>Methods</H2>
 <P>
 GenBank $organism ZGC mRNAs identified as having full-length ORFs 
 were aligned against the genome using blat. When a single mRNA 
 aligned in multiple places, the alignment having the highest base identity was
 found.  Only alignments having a base identity level within 1% of
 the best and at least 95% base identity with the genomic sequence 
 were kept.</P>
 
 <H2>Credits</H2>
 <P>
 The $organism ZGC full-length mRNA track was produced at UCSC from 
 mRNA sequence data submitted to 
 <A HREF="https://www.ncbi.nlm.nih.gov/Genbank/index.html" 
 TARGET=_blank>GenBank</A> by the 
 <A HREF="http://zgc.nci.nih.gov/" TARGET=_blank>Zebrafish Gene Collection</A> 
 project.</P>
 
 <H2>References</H2> 
 <P>
 Mammalian Gene Collection project <A HREF="http://mgc.nci.nih.gov/Info/References"
 TARGET=_blank>references</A>.</P>
 
 <P>
 Kent WJ.
-<A HREF="http://genome.cshlp.org/content/12/4/656.abstract" 
+<A HREF="https://genome.cshlp.org/content/12/4/656.abstract" 
 TARGET=_blank>BLAT - the BLAST-like alignment tool</A>.
 <em>Genome Res</em>. 2002 Apr;12(4):656-64.
 PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/11932250" target="_blank">11932250</a>; PMC: <a
 href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC187518" target="_blank">PMC187518</a>
 </p>